Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003147A_C01 KMC003147A_c01
(750 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T14332 homeotic protein - carrot gi|1435021|dbj|BAA05624.1|... 94 3e-19
gb|AAK84886.1|AF402605_1 homeodomain leucine zipper protein HDZ2... 94 2e-18
gb|AAF01765.1|AF184278_1 homeodomain-leucine zipper protein 57 [... 67 3e-10
pir||T07734 homeotic protein VAHOX1 - tomato gi|1161575|emb|CAA6... 61 2e-09
gb|AAO52512.1| similar to Streptococcus pneumoniae. Cell wall su... 35 1.1
>pir||T14332 homeotic protein - carrot gi|1435021|dbj|BAA05624.1| DNA-binding
protein [Daucus carota]
Length = 279
Score = 93.6 bits (231), Expect(2) = 3e-19
Identities = 60/141 (42%), Positives = 82/141 (57%), Gaps = 5/141 (3%)
Frame = -3
Query: 748 EKDMLKAEVASLTEKVLARENLKP---VESETKGLVEPPPRPLLDSVSEGEESKVSVGAC 578
EK+ LKAEV LT+K+L +E+ V + K + + +S GE SV C
Sbjct: 121 EKEKLKAEVLDLTDKLLLKEDKGSKTVVFDKQKVSAAFQQERVSNDISVGEVLSNSVMDC 180
Query: 577 KHEDISSARSESLDSDSPRYRDGYGVNSAVLETCDSSYVVEPDQSDMSQDEEDNLTKTLL 398
K ED +S +S+++DSDSP Y D V S+ +E D SYV EP QSD+SQDEED++ L
Sbjct: 181 KQEDHNSVKSDAVDSDSPHYSDE--VYSSFMEPVDRSYVFEPAQSDISQDEEDDMGNNLF 238
Query: 397 PP--YMFSKLGDMDYSDPPES 341
P ++FSK D YSD P +
Sbjct: 239 LPSYHVFSKTEDGSYSDQPSN 259
Score = 23.9 bits (50), Expect(2) = 3e-19
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -1
Query: 339 SCNFGFPEEDHALWSW 292
S FGFP EDH W
Sbjct: 260 SSYFGFPVEDHTFGFW 275
>gb|AAK84886.1|AF402605_1 homeodomain leucine zipper protein HDZ2 [Phaseolus vulgaris]
Length = 327
Score = 94.0 bits (232), Expect = 2e-18
Identities = 61/144 (42%), Positives = 81/144 (55%), Gaps = 8/144 (5%)
Frame = -3
Query: 748 EKDMLKAEVASLTEKVLARENLKPVESETKG--LVEPPPRPLLDSVSEGEE---SKVSVG 584
E D LKAEV SL K++ R+ K + V P + +D +S +KVS+
Sbjct: 167 ENDKLKAEVNSLESKLILRDKEKENSDDKSSPDAVNSPHKEPMDLISNSTSENGTKVSLP 226
Query: 583 ---ACKHEDISSARSESLDSDSPRYRDGYGVNSAVLETCDSSYVVEPDQSDMSQDEEDNL 413
CK ED +SA+S+ LDSDSP DG +S V E DSS+ EPD SD SQDEEDNL
Sbjct: 227 IMVTCKQEDANSAKSDVLDSDSPHCTDGNHPSSFV-EPADSSHAFEPDHSDFSQDEEDNL 285
Query: 412 TKTLLPPYMFSKLGDMDYSDPPES 341
+++LL K+ + Y DPPE+
Sbjct: 286 SESLLTLPCLPKVEEACYDDPPEN 309
>gb|AAF01765.1|AF184278_1 homeodomain-leucine zipper protein 57 [Glycine max]
Length = 288
Score = 67.0 bits (162), Expect = 3e-10
Identities = 57/168 (33%), Positives = 78/168 (45%), Gaps = 32/168 (19%)
Frame = -3
Query: 748 EKDMLKAEVASLTEKVLARENLKPVESETKGLVEPP-----------PRPLL-------- 626
E D LKAEV SL K++ R+ K S+ K + P LL
Sbjct: 110 ENDKLKAEVNSLESKLILRDKEKEENSDDKSSPDDAVNSSSPHNNKEPMDLLIISKNATT 169
Query: 625 DSVSEGEESKVS-------VGACKHEDISSARSESLDSDSPRYRDGYGVNSAVLETCDSS 467
+ SE +S V CK ED +SA+S+ LDSDSP ++ +E DSS
Sbjct: 170 TTTSENGTKVLSPLPLPIMVTCCKQEDANSAKSDVLDSDSPHC-------TSFVEPADSS 222
Query: 466 YVVEPD--QSDMSQDEEDNLTKTLLPPYMFS----KLGDMDYSDPPES 341
+ EP+ D SQDEEDNL++ LL + S K+ + Y PPE+
Sbjct: 223 HAFEPEDHSEDFSQDEEDNLSENLLMTFPSSCCLPKVEEHCYDGPPEN 270
>pir||T07734 homeotic protein VAHOX1 - tomato gi|1161575|emb|CAA64417.1|
homeobox [Lycopersicon esculentum]
Length = 323
Score = 60.8 bits (146), Expect(2) = 2e-09
Identities = 47/139 (33%), Positives = 74/139 (52%), Gaps = 9/139 (6%)
Frame = -3
Query: 748 EKDMLKAEVASLTEKVLARE------NLKPVESETKGLVEPPPRPLLDSVSEGEESKVSV 587
EK+ L+ EV LT K+ +E +L+ + L + ++D +S V
Sbjct: 171 EKEDLRTEVFRLTGKLFIKEKGNGQLDLRDEHKHSNALAK---ETVVDPMSN-----VPA 222
Query: 586 GACKH--EDISSARSESLDSDSPRYRDGYGVNSAVLETCDSSYVVEPDQSDMSQDEEDNL 413
KH ED+SSA+S+ DS+SPRY ++S+V++ DS+ E DQSD SQD+++N
Sbjct: 223 LVVKHQQEDLSSAKSDVFDSESPRYTSR--MHSSVVDQDDSARAFETDQSDSSQDDDENF 280
Query: 412 TKTLL-PPYMFSKLGDMDY 359
+K +L + K D DY
Sbjct: 281 SKNMLSTANLLGKDADDDY 299
Score = 23.5 bits (49), Expect(2) = 2e-09
Identities = 8/15 (53%), Positives = 9/15 (59%)
Frame = -1
Query: 330 FGFPEEDHALWSWSY 286
FGFP ED W+Y
Sbjct: 309 FGFPVEDQGFGFWTY 323
>gb|AAO52512.1| similar to Streptococcus pneumoniae. Cell wall surface anchor family
protein [Dictyostelium discoideum]
Length = 1806
Score = 35.0 bits (79), Expect = 1.1
Identities = 41/156 (26%), Positives = 63/156 (40%), Gaps = 6/156 (3%)
Frame = +3
Query: 282 FSKTMTKGHDLPPEIRNYMKLSGGSE*SISPSLENMYGGNRVLVRLSSSSCDISD*SGST 461
F T T G P + L + + S +++G + + ++++ + GST
Sbjct: 1049 FGSTTTSGLFSNPSTTSTGSLFSSNPLGSTASTSSLFGASTLASTATTTATPTTSLFGST 1108
Query: 462 T*EESHVSS------TAELTPYPSL*RGLSESKLSLLAELISSCLQAPTETLDSSPSETE 623
T S SS T+ TP SL G S S S + L S A T + + T
Sbjct: 1109 TPSSSSSSSSSSSSTTSTTTPSNSL-FGTSSSSSSTSSSLFGSTTSATTPS-SLFGTTTT 1166
Query: 624 SSKGLGGGSTNPLVSLSTGFKFSLASTFSVRLATSA 731
SS T P +S F + AS FS+ +TS+
Sbjct: 1167 SSDSKSETKTTPSLSSGGLFSTTSASPFSIPSSTSS 1202
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 646,634,452
Number of Sequences: 1393205
Number of extensions: 14186564
Number of successful extensions: 49239
Number of sequences better than 10.0: 67
Number of HSP's better than 10.0 without gapping: 42332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49127
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36314099463
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
