Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003145A_C01 KMC003145A_c01
(652 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL66964.1| unknown protein [Arabidopsis thaliana] 197 1e-49
ref|NP_182024.2| unknown protein; protein id: At2g44970.1, suppo... 197 1e-49
pir||T00396 hypothetical protein At2g44970 [imported] - Arabidop... 197 1e-49
emb|CAD70391.1| conserved hypothetical protein [Neurospora crass... 35 0.88
dbj|BAA83002.1| KIAA1050 protein [Homo sapiens] 34 1.5
>gb|AAL66964.1| unknown protein [Arabidopsis thaliana]
Length = 503
Score = 197 bits (501), Expect = 1e-49
Identities = 103/128 (80%), Positives = 111/128 (86%)
Frame = -3
Query: 650 SFRTEAGISPAVLATLSHVAHAELPLVASAGETTKLPVVMPLGAALAACAQLLQVRYGEK 471
SFRTEA ISPAVL+TLSHVAHAELPL A KLPVVMPLGAA+AACAQLLQVRYGEK
Sbjct: 377 SFRTEASISPAVLSTLSHVAHAELPLTNQAA---KLPVVMPLGAAMAACAQLLQVRYGEK 433
Query: 470 SDGLVTCRDAEVPGSVVVRPTRKLDHAWMVYSSLNDDPAEGDASQVCEALLTLLVEVGQK 291
SDGLVTC DAEVPGSVVVRP RKLDHAWMVYSSLN+ P E DA+QVCEALLTLLV+V Q+
Sbjct: 434 SDGLVTCCDAEVPGSVVVRPKRKLDHAWMVYSSLNEVPLEADAAQVCEALLTLLVQVEQE 493
Query: 290 KRHDLAMK 267
++ LA K
Sbjct: 494 RQQKLATK 501
>ref|NP_182024.2| unknown protein; protein id: At2g44970.1, supported by cDNA:
gi_18377627 [Arabidopsis thaliana]
gi|25054931|gb|AAN71942.1| unknown protein [Arabidopsis
thaliana]
Length = 503
Score = 197 bits (501), Expect = 1e-49
Identities = 103/128 (80%), Positives = 111/128 (86%)
Frame = -3
Query: 650 SFRTEAGISPAVLATLSHVAHAELPLVASAGETTKLPVVMPLGAALAACAQLLQVRYGEK 471
SFRTEA ISPAVL+TLSHVAHAELPL A KLPVVMPLGAA+AACAQLLQVRYGEK
Sbjct: 377 SFRTEASISPAVLSTLSHVAHAELPLTNQAA---KLPVVMPLGAAMAACAQLLQVRYGEK 433
Query: 470 SDGLVTCRDAEVPGSVVVRPTRKLDHAWMVYSSLNDDPAEGDASQVCEALLTLLVEVGQK 291
SDGLVTC DAEVPGSVVVRP RKLDHAWMVYSSLN+ P E DA+QVCEALLTLLV+V Q+
Sbjct: 434 SDGLVTCCDAEVPGSVVVRPKRKLDHAWMVYSSLNEVPLEADAAQVCEALLTLLVQVEQE 493
Query: 290 KRHDLAMK 267
++ LA K
Sbjct: 494 RQQKLATK 501
>pir||T00396 hypothetical protein At2g44970 [imported] - Arabidopsis thaliana
gi|20196918|gb|AAM14832.1| unknown protein [Arabidopsis
thaliana]
Length = 461
Score = 197 bits (501), Expect = 1e-49
Identities = 103/128 (80%), Positives = 111/128 (86%)
Frame = -3
Query: 650 SFRTEAGISPAVLATLSHVAHAELPLVASAGETTKLPVVMPLGAALAACAQLLQVRYGEK 471
SFRTEA ISPAVL+TLSHVAHAELPL A KLPVVMPLGAA+AACAQLLQVRYGEK
Sbjct: 335 SFRTEASISPAVLSTLSHVAHAELPLTNQAA---KLPVVMPLGAAMAACAQLLQVRYGEK 391
Query: 470 SDGLVTCRDAEVPGSVVVRPTRKLDHAWMVYSSLNDDPAEGDASQVCEALLTLLVEVGQK 291
SDGLVTC DAEVPGSVVVRP RKLDHAWMVYSSLN+ P E DA+QVCEALLTLLV+V Q+
Sbjct: 392 SDGLVTCCDAEVPGSVVVRPKRKLDHAWMVYSSLNEVPLEADAAQVCEALLTLLVQVEQE 451
Query: 290 KRHDLAMK 267
++ LA K
Sbjct: 452 RQQKLATK 459
>emb|CAD70391.1| conserved hypothetical protein [Neurospora crassa]
gi|28925209|gb|EAA34290.1| hypothetical protein
[Neurospora crassa]
Length = 888
Score = 35.0 bits (79), Expect = 0.88
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 2/115 (1%)
Frame = +1
Query: 232 GRYNKICVLHSSFIARSCLFFCPTSTSRVKRASHT*DASPSAGSSFSDE*TIQAWSNLRV 411
G ++ S F A P+STS+ +R A P + DE ++ + V
Sbjct: 11 GAQRQVRRFSSGFAAEEPDISTPSSTSQHQRTRSDGAALPESVFEDGDENYRRSLDGIVV 70
Query: 412 GRTTTDPGTSASRHVTSPS--LFSPYLTCSNCAQAARAAPKGITTGSLVVSPADA 570
GRT P + T+P+ S + A A A P+ TG + V P A
Sbjct: 71 GRTVAQPVAVVTTTTTTPTNVASSSHSRLGEAADVATATPEAGHTGQVPVPPTSA 125
>dbj|BAA83002.1| KIAA1050 protein [Homo sapiens]
Length = 829
Score = 34.3 bits (77), Expect = 1.5
Identities = 29/90 (32%), Positives = 37/90 (40%), Gaps = 1/90 (1%)
Frame = +1
Query: 295 CPTSTSRVKRASHT*DASPSAGSSFSDE*TIQAWSNLR-VGRTTTDPGTSASRHVTSPSL 471
CP + R K S GSSFS W +L+ G T PG S H
Sbjct: 625 CPLAARRQKEGSLN-------GSSFS-------WKSLKNEGPTCPTPGCDGSGHANGS-- 668
Query: 472 FSPYLTCSNCAQAARAAPKGITTGSLVVSP 561
F + + S C +A A KG +G V+SP
Sbjct: 669 FLTHRSLSGCPRATFAGKKGKLSGDEVLSP 698
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 591,435,060
Number of Sequences: 1393205
Number of extensions: 12983294
Number of successful extensions: 37049
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 34928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36850
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
