Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003139A_C01 KMC003139A_c01
(427 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173266.1| unknown protein; protein id: At1g18300.1 [Arabi... 88 3e-17
gb|AAM66124.1| unknown [Arabidopsis thaliana] 84 4e-16
ref|NP_565273.1| expressed protein; protein id: At2g01670.1, sup... 84 4e-16
ref|NP_172939.1| hypothetical protein; protein id: At1g14860.1 [... 82 2e-15
dbj|BAC16411.1| MutT-like protein~contains ESTs AU085960(E12196)... 75 2e-13
>ref|NP_173266.1| unknown protein; protein id: At1g18300.1 [Arabidopsis thaliana]
gi|6714298|gb|AAF25994.1|AC013354_13 F15H18.18
[Arabidopsis thaliana]
gi|8671772|gb|AAF78378.1|AC069551_11 T10O22.27
[Arabidopsis thaliana] gi|27765008|gb|AAO23625.1|
At1g18300 [Arabidopsis thaliana]
Length = 207
Score = 87.8 bits (216), Expect = 3e-17
Identities = 49/96 (51%), Positives = 61/96 (63%), Gaps = 4/96 (4%)
Frame = +1
Query: 151 NSSTLCFSLIRKLPRDLFPKADWRMLLGLVSPRTGRHLQRYDK-GCRLVVGCIPYRYKRN 327
N ++ + +P A ++ LVS RTGR LQRYD G R VVGC+PYRYK+
Sbjct: 15 NVASYLSPIFENIPSTKVVPAQIEKVVSLVS-RTGRDLQRYDHAGYRQVVGCVPYRYKKQ 73
Query: 328 ETQDKE---IEVLVISAQKGHGMQFPKGGWESDESM 426
E E I+VL++SAQKG GM FPKGGWE+DESM
Sbjct: 74 EVNGVETQVIQVLLVSAQKGKGMLFPKGGWETDESM 109
>gb|AAM66124.1| unknown [Arabidopsis thaliana]
Length = 177
Score = 84.0 bits (206), Expect = 4e-16
Identities = 39/65 (60%), Positives = 49/65 (75%), Gaps = 2/65 (3%)
Frame = +1
Query: 238 VSPRTGRHLQRYDKGCRLVVGCIPYRYKRNETQ--DKEIEVLVISAQKGHGMQFPKGGWE 411
++ RTGR QRY+KG R VVGC+PYR+K + E+EVLVIS+QKGH + FPKGGWE
Sbjct: 4 LASRTGRQFQRYNKGRRQVVGCVPYRFKLSNDGKISDEVEVLVISSQKGHALMFPKGGWE 63
Query: 412 SDESM 426
DES+
Sbjct: 64 LDESV 68
>ref|NP_565273.1| expressed protein; protein id: At2g01670.1, supported by cDNA:
8247., supported by cDNA: gi_13272382, supported by
cDNA: gi_15293192, supported by cDNA: gi_15724325
[Arabidopsis thaliana] gi|25367543|pir||F84427
hypothetical protein At2g01670 [imported] - Arabidopsis
thaliana gi|4220481|gb|AAD12704.1| expressed protein
[Arabidopsis thaliana]
gi|13272383|gb|AAK17130.1|AF325062_1 unknown protein
[Arabidopsis thaliana]
gi|13430438|gb|AAK25841.1|AF360131_1 unknown protein
[Arabidopsis thaliana] gi|15293193|gb|AAK93707.1|
unknown protein [Arabidopsis thaliana]
gi|15724326|gb|AAL06556.1|AF412103_1 At2g01670/T8O11.16
[Arabidopsis thaliana]
Length = 182
Score = 84.0 bits (206), Expect = 4e-16
Identities = 39/65 (60%), Positives = 49/65 (75%), Gaps = 2/65 (3%)
Frame = +1
Query: 238 VSPRTGRHLQRYDKGCRLVVGCIPYRYKRNETQ--DKEIEVLVISAQKGHGMQFPKGGWE 411
++ RTGR QRY+KG R VVGC+PYR+K + E+EVLVIS+QKGH + FPKGGWE
Sbjct: 9 LASRTGRQFQRYNKGRRQVVGCVPYRFKLSNDGKISDEVEVLVISSQKGHALMFPKGGWE 68
Query: 412 SDESM 426
DES+
Sbjct: 69 LDESV 73
>ref|NP_172939.1| hypothetical protein; protein id: At1g14860.1 [Arabidopsis
thaliana] gi|25367541|pir||D86282 protein F10B6.26
[imported] - Arabidopsis thaliana
gi|8778216|gb|AAF79225.1|AC006917_10 F10B6.26
[Arabidopsis thaliana] gi|26449995|dbj|BAC42118.1|
unknown protein [Arabidopsis thaliana]
gi|28973055|gb|AAO63852.1| unknown protein [Arabidopsis
thaliana]
Length = 176
Score = 82.0 bits (201), Expect = 2e-15
Identities = 41/62 (66%), Positives = 46/62 (74%), Gaps = 2/62 (3%)
Frame = +1
Query: 247 RTGRHLQRYDKGCRLVVGCIPYRYKRNE--TQDKEIEVLVISAQKGHGMQFPKGGWESDE 420
RTGR QRY+KG R VVGCIPYR K + T E EVLVIS+QKGH + FPKGGWE DE
Sbjct: 7 RTGRQSQRYNKGRRQVVGCIPYRLKISSDGTISDEFEVLVISSQKGHALMFPKGGWELDE 66
Query: 421 SM 426
S+
Sbjct: 67 SV 68
>dbj|BAC16411.1| MutT-like protein~contains ESTs
AU085960(E12196),AU082656(C62260),C28751(C62260) [Oryza
sativa (japonica cultivar-group)]
Length = 181
Score = 74.7 bits (182), Expect = 2e-13
Identities = 39/66 (59%), Positives = 49/66 (74%), Gaps = 6/66 (9%)
Frame = +1
Query: 247 RTGRHLQRYDKGCRLVVGCIPYRYKRN--ETQD----KEIEVLVISAQKGHGMQFPKGGW 408
RTGRH QRY+ G RLV CIP+RYK N ET D K +EVL+I++Q G G+ FPKGGW
Sbjct: 7 RTGRHQQRYEHGRRLVA-CIPFRYKDNNDETSDDGHKKLVEVLMINSQSGSGLLFPKGGW 65
Query: 409 ESDESM 426
E+DE++
Sbjct: 66 ENDETV 71
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 376,628,724
Number of Sequences: 1393205
Number of extensions: 7695671
Number of successful extensions: 24152
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 22030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23981
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 6856422288
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
