Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003138A_C01 KMC003138A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA79704.1| OBP33pep 79 5e-14
pir||D85171 OBP33pep like protein [imported] - Arabidopsis thali... 79 5e-14
ref|NP_193287.1| OBP33pep like protein; protein id: At4g15520.1 ... 79 5e-14
pir||H71419 hypothetical protein - Arabidopsis thaliana 79 5e-14
dbj|BAA09868.2| vacuolar type ATP synthase subunit [Thermus ther... 33 2.3
>gb|AAA79704.1| OBP33pep
Length = 210
Score = 78.6 bits (192), Expect = 5e-14
Identities = 40/64 (62%), Positives = 52/64 (80%), Gaps = 2/64 (3%)
Frame = -2
Query: 548 GNKFVVAERPVKQSRRNYCAEAEESVIEERKARRENAANGGFFDE--TESGNSSSSLPDA 375
G+KF+VA+RPV+Q RRN+CA EESVIEERK R+E+A N GFFD+ E+G+SSS L D
Sbjct: 147 GSKFIVADRPVRQGRRNFCAGTEESVIEERKLRKESAEN-GFFDDNGNENGSSSSDLLDG 205
Query: 374 LFVD 363
LF++
Sbjct: 206 LFLN 209
>pir||D85171 OBP33pep like protein [imported] - Arabidopsis thaliana
gi|5281018|emb|CAB45991.1| OBP33pep like protein
[Arabidopsis thaliana] gi|7268299|emb|CAB78594.1|
OBP33pep like protein [Arabidopsis thaliana]
Length = 278
Score = 78.6 bits (192), Expect = 5e-14
Identities = 40/64 (62%), Positives = 52/64 (80%), Gaps = 2/64 (3%)
Frame = -2
Query: 548 GNKFVVAERPVKQSRRNYCAEAEESVIEERKARRENAANGGFFDE--TESGNSSSSLPDA 375
G+KF+VA+RPV+Q RRN+CA EESVIEERK R+E+A N GFFD+ E+G+SSS L D
Sbjct: 159 GSKFIVADRPVRQGRRNFCAGTEESVIEERKLRKESAEN-GFFDDNGNENGSSSSDLLDG 217
Query: 374 LFVD 363
LF++
Sbjct: 218 LFLN 221
>ref|NP_193287.1| OBP33pep like protein; protein id: At4g15520.1 [Arabidopsis
thaliana] gi|26449903|dbj|BAC42073.1| OBP33pep like
protein [Arabidopsis thaliana]
gi|28827336|gb|AAO50512.1| putative OBP33pep protein
[Arabidopsis thaliana]
Length = 222
Score = 78.6 bits (192), Expect = 5e-14
Identities = 40/64 (62%), Positives = 52/64 (80%), Gaps = 2/64 (3%)
Frame = -2
Query: 548 GNKFVVAERPVKQSRRNYCAEAEESVIEERKARRENAANGGFFDE--TESGNSSSSLPDA 375
G+KF+VA+RPV+Q RRN+CA EESVIEERK R+E+A N GFFD+ E+G+SSS L D
Sbjct: 159 GSKFIVADRPVRQGRRNFCAGTEESVIEERKLRKESAEN-GFFDDNGNENGSSSSDLLDG 217
Query: 374 LFVD 363
LF++
Sbjct: 218 LFLN 221
>pir||H71419 hypothetical protein - Arabidopsis thaliana
Length = 232
Score = 78.6 bits (192), Expect = 5e-14
Identities = 40/64 (62%), Positives = 52/64 (80%), Gaps = 2/64 (3%)
Frame = -2
Query: 548 GNKFVVAERPVKQSRRNYCAEAEESVIEERKARRENAANGGFFDE--TESGNSSSSLPDA 375
G+KF+VA+RPV+Q RRN+CA EESVIEERK R+E+A N GFFD+ E+G+SSS L D
Sbjct: 159 GSKFIVADRPVRQGRRNFCAGTEESVIEERKLRKESAEN-GFFDDNGNENGSSSSDLLDG 217
Query: 374 LFVD 363
LF++
Sbjct: 218 LFLN 221
>dbj|BAA09868.2| vacuolar type ATP synthase subunit [Thermus thermophilus]
Length = 648
Score = 33.1 bits (74), Expect = 2.3
Identities = 17/49 (34%), Positives = 27/49 (54%), Gaps = 1/49 (2%)
Frame = -3
Query: 436 PMVVSLMRLRVEIHLQASLMHCL-WMVDGFCVITWGAMIFSLFGW*LDH 293
P+V+ L L+++ + L+H L WMV F + WG + FG L+H
Sbjct: 384 PLVIDLFALKLKPQVIGKLVHILNWMV--FWTVVWGVIYGEFFGTFLEH 430
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 470,583,161
Number of Sequences: 1393205
Number of extensions: 10114067
Number of successful extensions: 24536
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24400
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
