Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003130A_C02 KMC003130A_c02
(781 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565736.1| putative purine-rich single-stranded DNA-bindin... 309 3e-83
gb|AAL31888.1|AF419556_1 At2g32080/F22D22.17 [Arabidopsis thaliana] 305 4e-82
pir||G84728 hypothetical protein At2g32080 [imported] - Arabidop... 305 4e-82
dbj|BAB03442.1| unnamed protein product [Oryza sativa (japonica ... 293 2e-78
ref|NP_726579.1| Purine-rich binding protein-alpha CG1507-PA gi|... 75 1e-12
>ref|NP_565736.1| putative purine-rich single-stranded DNA-binding protein; protein
id: At2g32080.1, supported by cDNA: gi_15450692,
supported by cDNA: gi_17386137, supported by cDNA:
gi_5081611 [Arabidopsis thaliana]
gi|5081612|gb|AAD39465.1|AF136152_1 PUR alpha-1
[Arabidopsis thaliana] gi|15450693|gb|AAK96618.1|
At2g32080/F22D22.17 [Arabidopsis thaliana]
gi|17386138|gb|AAL38615.1|AF446882_1 At2g32080/F22D22.17
[Arabidopsis thaliana] gi|20197621|gb|AAD15396.2|
putative purine-rich single-stranded DNA-binding protein
[Arabidopsis thaliana]
Length = 296
Score = 309 bits (791), Expect = 3e-83
Identities = 161/204 (78%), Positives = 174/204 (84%), Gaps = 9/204 (4%)
Frame = +3
Query: 195 MEGNSGGGGG---------GGSGGGGSDVELLCKTLQVEHKLFYFDLKENPRGRYLKISE 347
ME NSGGGGG GG GGGGSDVEL+ KTLQVEHKLFYFDLKENPRGRYLKISE
Sbjct: 1 MEANSGGGGGAEGGRAVTGGGGGGGGSDVELVSKTLQVEHKLFYFDLKENPRGRYLKISE 60
Query: 348 KTSATRSTIIVPFSGISWFLDLFNYYVNSDDQDLFSKELQLDTKVFYFEIGENRRGRFLK 527
KTSATRSTIIVP SGISWFLDLFNYYVNS++ +LFSKELQLD+KVFYF+IGENRRGRFLK
Sbjct: 61 KTSATRSTIIVPSSGISWFLDLFNYYVNSEEHELFSKELQLDSKVFYFDIGENRRGRFLK 120
Query: 528 VSEASVSRNRSTIIVPAGSSRDEGWAAFRNI*AEINEASRLFIMPNQQQNSESSERLVGL 707
VSEASVSRNRSTIIVPAGSS DEGWAAFRNI AEI+EAS LF+MPNQ + S+ E LV
Sbjct: 121 VSEASVSRNRSTIIVPAGSSPDEGWAAFRNILAEIHEASGLFVMPNQVKPSDGQEHLV-- 178
Query: 708 SDDVGAGFISGHSTQPATSSELSV 779
DDVGAGFI GH +Q +SSE +V
Sbjct: 179 -DDVGAGFIPGHGSQQPSSSEHNV 201
Score = 51.6 bits (122), Expect = 1e-05
Identities = 22/54 (40%), Positives = 36/54 (65%)
Frame = +3
Query: 267 KTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYV 428
K ++ + K F+FDL N RG +L+ISE + RS+II+P SG+ F ++ ++V
Sbjct: 220 KVIRADQKRFFFDLGNNNRGHFLRISEVAGSDRSSIILPLSGLKQFHEVIGHFV 273
Score = 42.7 bits (99), Expect = 0.006
Identities = 20/41 (48%), Positives = 31/41 (74%)
Frame = +3
Query: 453 SKELQLDTKVFYFEIGENRRGRFLKVSEASVSRNRSTIIVP 575
SK ++ D K F+F++G N RG FL++SE + S +RS+II+P
Sbjct: 219 SKVIRADQKRFFFDLGNNNRGHFLRISEVAGS-DRSSIILP 258
>gb|AAL31888.1|AF419556_1 At2g32080/F22D22.17 [Arabidopsis thaliana]
Length = 295
Score = 305 bits (782), Expect = 4e-82
Identities = 161/204 (78%), Positives = 174/204 (84%), Gaps = 9/204 (4%)
Frame = +3
Query: 195 MEGNSGGGGG---------GGSGGGGSDVELLCKTLQVEHKLFYFDLKENPRGRYLKISE 347
ME NSGGGGG GG GGGGSDVEL+ KTLQVEHKLFYFDLKENPRGRYLKISE
Sbjct: 1 MEANSGGGGGAEGGRAVTGGGGGGGGSDVELVSKTLQVEHKLFYFDLKENPRGRYLKISE 60
Query: 348 KTSATRSTIIVPFSGISWFLDLFNYYVNSDDQDLFSKELQLDTKVFYFEIGENRRGRFLK 527
KTSATRSTIIVP SGISWFLDLFNYYVNS++ +LFSKELQLD+KVFYF+IGENRRGRFLK
Sbjct: 61 KTSATRSTIIVPSSGISWFLDLFNYYVNSEEHELFSKELQLDSKVFYFDIGENRRGRFLK 120
Query: 528 VSEASVSRNRSTIIVPAGSSRDEGWAAFRNI*AEINEASRLFIMPNQQQNSESSERLVGL 707
VSEASVSRNRSTIIVPAGSS DEGWAAFRNI AEI+EAS LF+MPNQ+ S+ E LV
Sbjct: 121 VSEASVSRNRSTIIVPAGSSPDEGWAAFRNILAEIHEASGLFVMPNQKP-SDGQEHLV-- 177
Query: 708 SDDVGAGFISGHSTQPATSSELSV 779
DDVGAGFI GH +Q +SSE +V
Sbjct: 178 -DDVGAGFIPGHGSQQPSSSEHNV 200
Score = 51.6 bits (122), Expect = 1e-05
Identities = 22/54 (40%), Positives = 36/54 (65%)
Frame = +3
Query: 267 KTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYV 428
K ++ + K F+FDL N RG +L+ISE + RS+II+P SG+ F ++ ++V
Sbjct: 219 KVIRADQKRFFFDLGNNNRGHFLRISEVAGSDRSSIILPLSGLKQFHEVIGHFV 272
Score = 42.7 bits (99), Expect = 0.006
Identities = 20/41 (48%), Positives = 31/41 (74%)
Frame = +3
Query: 453 SKELQLDTKVFYFEIGENRRGRFLKVSEASVSRNRSTIIVP 575
SK ++ D K F+F++G N RG FL++SE + S +RS+II+P
Sbjct: 218 SKVIRADQKRFFFDLGNNNRGHFLRISEVAGS-DRSSIILP 257
>pir||G84728 hypothetical protein At2g32080 [imported] - Arabidopsis thaliana
Length = 270
Score = 305 bits (782), Expect = 4e-82
Identities = 161/204 (78%), Positives = 174/204 (84%), Gaps = 9/204 (4%)
Frame = +3
Query: 195 MEGNSGGGGG---------GGSGGGGSDVELLCKTLQVEHKLFYFDLKENPRGRYLKISE 347
ME NSGGGGG GG GGGGSDVEL+ KTLQVEHKLFYFDLKENPRGRYLKISE
Sbjct: 1 MEANSGGGGGAEGGRAVTGGGGGGGGSDVELVSKTLQVEHKLFYFDLKENPRGRYLKISE 60
Query: 348 KTSATRSTIIVPFSGISWFLDLFNYYVNSDDQDLFSKELQLDTKVFYFEIGENRRGRFLK 527
KTSATRSTIIVP SGISWFLDLFNYYVNS++ +LFSKELQLD+KVFYF+IGENRRGRFLK
Sbjct: 61 KTSATRSTIIVPSSGISWFLDLFNYYVNSEEHELFSKELQLDSKVFYFDIGENRRGRFLK 120
Query: 528 VSEASVSRNRSTIIVPAGSSRDEGWAAFRNI*AEINEASRLFIMPNQQQNSESSERLVGL 707
VSEASVSRNRSTIIVPAGSS DEGWAAFRNI AEI+EAS LF+MPNQ+ S+ E LV
Sbjct: 121 VSEASVSRNRSTIIVPAGSSPDEGWAAFRNILAEIHEASGLFVMPNQKP-SDGQEHLV-- 177
Query: 708 SDDVGAGFISGHSTQPATSSELSV 779
DDVGAGFI GH +Q +SSE +V
Sbjct: 178 -DDVGAGFIPGHGSQQPSSSEHNV 200
>dbj|BAB03442.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 308
Score = 293 bits (749), Expect = 2e-78
Identities = 145/196 (73%), Positives = 170/196 (85%), Gaps = 3/196 (1%)
Frame = +3
Query: 201 GNSGGGGGGGSGGGGSDVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIV 380
G +GGGGGGG GG G DVEL+ KTLQ EHKLFYFDLKENPRGRYLKISEKTS+TRSTIIV
Sbjct: 18 GVAGGGGGGGGGGVGGDVELVSKTLQFEHKLFYFDLKENPRGRYLKISEKTSSTRSTIIV 77
Query: 381 PFSGISWFLDLFNYYVNSDDQDLFSKELQLDTKVFYFEIGENRRGRFLKVSEASVSRNRS 560
P +G++WFLDLF+YY+ +D++D FSKEL+LDTKVFYF+IGEN+RGRFLKVSEASV+RNRS
Sbjct: 78 PVAGVAWFLDLFDYYIRTDERDAFSKELRLDTKVFYFDIGENKRGRFLKVSEASVNRNRS 137
Query: 561 TIIVPAGSSRDEGWAAFRNI*AEI-NEASRLFIMPN--QQQNSESSERLVGLSDDVGAGF 731
TIIVPAGSS +EGW AFRN+ EI NEASRL+++PN QQ+ E ERL GLSDDVGAGF
Sbjct: 138 TIIVPAGSSGEEGWEAFRNVLLEINNEASRLYVLPNHPNQQHLEPPERLPGLSDDVGAGF 197
Query: 732 ISGHSTQPATSSELSV 779
I+GH +Q A+ E+ V
Sbjct: 198 IAGHGSQSASGPEVDV 213
Score = 55.1 bits (131), Expect = 1e-06
Identities = 24/57 (42%), Positives = 38/57 (66%)
Frame = +3
Query: 261 LCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISWFLDLFNYYVN 431
+ K ++ + K F+FDL N RG YL+ISE A RS+II+P SG+ F ++ ++V+
Sbjct: 230 MSKVIRADQKRFFFDLGSNNRGHYLRISEVAGADRSSIILPLSGLKQFHEMVGHFVD 286
Score = 40.8 bits (94), Expect = 0.022
Identities = 18/41 (43%), Positives = 30/41 (72%)
Frame = +3
Query: 453 SKELQLDTKVFYFEIGENRRGRFLKVSEASVSRNRSTIIVP 575
SK ++ D K F+F++G N RG +L++SE + +RS+II+P
Sbjct: 231 SKVIRADQKRFFFDLGSNNRGHYLRISEVA-GADRSSIILP 270
>ref|NP_726579.1| Purine-rich binding protein-alpha CG1507-PA
gi|24638640|ref|NP_726580.1| Purine-rich binding
protein-alpha CG1507-PC gi|16769028|gb|AAL28733.1|
LD15002p [Drosophila melanogaster]
gi|22759350|gb|AAN06497.1| CG1507-PA [Drosophila
melanogaster] gi|22759351|gb|AAN06498.1| CG1507-PC
[Drosophila melanogaster]
Length = 274
Score = 74.7 bits (182), Expect = 1e-12
Identities = 59/176 (33%), Positives = 90/176 (50%), Gaps = 18/176 (10%)
Frame = +3
Query: 165 ITSLSSGAAEMEGNSGGGGGGGSGGGGSDVE--LLCKTLQVEHKLFYFDLKENPRGRYLK 338
I+ A MEG+S S GGS VE L K LQ++ K FY D+K+N RGR++K
Sbjct: 11 ISGSKYNVANMEGSSSRNDFDSSAKGGSGVEQELATKMLQIQSKRFYLDVKQNRRGRFIK 70
Query: 339 ISE-KTSATRSTIIVPFSGISWFLD----LFNYYVN---------SDDQDLFSKELQLDT 476
++E RS I + S + F D +YY + +D L S+ + D
Sbjct: 71 VAEIGADGRRSQIYLALSTAAEFRDHLSSFSDYYASLGPPNTDNLPEDGKLKSEMMIKDY 130
Query: 477 KVFYFEIGENRRGRFLKVSEASVSRN--RSTIIVPAGSSRDEGWAAFRNI*AEINE 638
+ +Y ++ EN RGRFL+VS+ +++R RS I +PA +G FR+ ++ E
Sbjct: 131 RRYYLDLKENARGRFLRVSQ-TITRGGPRSQIALPA-----QGMIEFRDALTDLLE 180
Score = 64.3 bits (155), Expect = 2e-09
Identities = 43/134 (32%), Positives = 76/134 (56%), Gaps = 10/134 (7%)
Frame = +3
Query: 249 DVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTS--ATRSTIIVPFSGISWF----LD 410
D +L + + +++ +Y DLKEN RGR+L++S+ + RS I +P G+ F D
Sbjct: 118 DGKLKSEMMIKDYRRYYLDLKENARGRFLRVSQTITRGGPRSQIALPAQGMIEFRDALTD 177
Query: 411 LFNYYVNSDDQ---DL-FSKELQLDTKVFYFEIGENRRGRFLKVSEASVSRNRSTIIVPA 578
L + +D DL + +++D K FYF+IG+N RG ++++SE + R++I +P
Sbjct: 178 LLEEFGANDGGFKGDLPEERHMKVDNKNFYFDIGQNNRGVYMRISEVK-NNFRTSITIP- 235
Query: 579 GSSRDEGWAAFRNI 620
++ W FR+I
Sbjct: 236 ----EKCWIRFRDI 245
Score = 46.2 bits (108), Expect = 5e-04
Identities = 29/87 (33%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +3
Query: 222 GGGSGGGGSDVELLCKTLQVEHKLFYFDLKENPRGRYLKISEKTSATRSTIIVPFSGISW 401
G GG D+ + ++V++K FYFD+ +N RG Y++ISE + R++I +P
Sbjct: 183 GANDGGFKGDLPEE-RHMKVDNKNFYFDIGQNNRGVYMRISEVKNNFRTSITIPEKCWIR 241
Query: 402 FLDLFNYYVN--SDDQDLFSKELQLDT 476
F D+FN Y D + E+ L T
Sbjct: 242 FRDIFNDYCEKMKKSSDSITAEINLPT 268
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 704,827,016
Number of Sequences: 1393205
Number of extensions: 17608736
Number of successful extensions: 369790
Number of sequences better than 10.0: 2077
Number of HSP's better than 10.0 without gapping: 95262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248386
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38655378996
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
