Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003129A_C01 KMC003129A_c01
(432 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC23046.1| putative allantoinase [Solanum tuberosum] 131 2e-30
ref|NP_567276.1| Expressed protein; protein id: At4g04955.1, sup... 120 3e-27
gb|AAM63760.1| unknown [Arabidopsis thaliana] 117 3e-26
gb|AAN72834.1| allantoinase [Ctenocephalides felis] 54 4e-07
gb|ZP_00058411.1| hypothetical protein [Thermobifida fusca] 48 2e-05
>dbj|BAC23046.1| putative allantoinase [Solanum tuberosum]
Length = 261
Score = 131 bits (330), Expect = 2e-30
Identities = 59/86 (68%), Positives = 73/86 (84%)
Frame = -3
Query: 409 ARNPATLAGIASKGAIVVGNHADIVVWHPELEFELNDDYPVFLKHPNLSAYMGRRLSGKV 230
+ NPA LAG+ +KGAI VGN ADIVVW P++EF+L++DYPV +KHP++SAYMG RLSGKV
Sbjct: 174 SENPAKLAGLTTKGAIAVGNQADIVVWEPDMEFDLDNDYPVHIKHPSISAYMGSRLSGKV 233
Query: 229 LDTFVRGNLVFKDGKHAPAACGVPIL 152
L TFVRGNLV+K+G HA AC +PIL
Sbjct: 234 LATFVRGNLVYKEGNHASQACALPIL 259
>ref|NP_567276.1| Expressed protein; protein id: At4g04955.1, supported by cDNA:
269337., supported by cDNA: gi_15028088, supported by
cDNA: gi_21281138 [Arabidopsis thaliana]
gi|15028089|gb|AAK76575.1| unknown protein [Arabidopsis
thaliana] gi|21281139|gb|AAM44996.1| unknown protein
[Arabidopsis thaliana]
Length = 506
Score = 120 bits (302), Expect = 3e-27
Identities = 52/79 (65%), Positives = 67/79 (83%)
Frame = -3
Query: 400 PATLAGIASKGAIVVGNHADIVVWHPELEFELNDDYPVFLKHPNLSAYMGRRLSGKVLDT 221
P+ LAG+ SKGA+ VG HAD+VVW PE EF++++D+P+ KHP++SAY+GRRLSGKV+ T
Sbjct: 421 PSKLAGLHSKGAVTVGKHADLVVWEPEAEFDVDEDHPIHFKHPSISAYLGRRLSGKVVST 480
Query: 220 FVRGNLVFKDGKHAPAACG 164
FVRGNLVF +GKHA ACG
Sbjct: 481 FVRGNLVFGEGKHASDACG 499
>gb|AAM63760.1| unknown [Arabidopsis thaliana]
Length = 506
Score = 117 bits (294), Expect = 3e-26
Identities = 51/79 (64%), Positives = 66/79 (82%)
Frame = -3
Query: 400 PATLAGIASKGAIVVGNHADIVVWHPELEFELNDDYPVFLKHPNLSAYMGRRLSGKVLDT 221
P+ LA + SKGA+ VG HAD+VVW PE EF++++D+P+ KHP++SAY+GRRLSGKV+ T
Sbjct: 421 PSKLARLHSKGAVTVGKHADLVVWEPEAEFDVDEDHPIHFKHPSISAYLGRRLSGKVVST 480
Query: 220 FVRGNLVFKDGKHAPAACG 164
FVRGNLVF +GKHA ACG
Sbjct: 481 FVRGNLVFGEGKHASDACG 499
>gb|AAN72834.1| allantoinase [Ctenocephalides felis]
Length = 483
Score = 53.9 bits (128), Expect = 4e-07
Identities = 31/74 (41%), Positives = 45/74 (59%), Gaps = 2/74 (2%)
Frame = -3
Query: 400 PATLAGIAS-KGAIVVGNHADIVVWHPELEFELNDDYPVFLKHPNL-SAYMGRRLSGKVL 227
PA L G+ KG I G AD+V+W PE EF++ D ++H N + Y+G L GKV
Sbjct: 401 PAKLTGLDGIKGQIKEGLDADLVIWDPEEEFKVTKD---IIQHKNKETPYLGMTLKGKVH 457
Query: 226 DTFVRGNLVFKDGK 185
T VRG+ V+++G+
Sbjct: 458 ATVVRGDFVYRNGQ 471
>gb|ZP_00058411.1| hypothetical protein [Thermobifida fusca]
Length = 489
Score = 48.1 bits (113), Expect = 2e-05
Identities = 32/89 (35%), Positives = 47/89 (51%), Gaps = 2/89 (2%)
Frame = -3
Query: 409 ARNPATLAGIASKGAIVVGNHADIVVWHPELEFELNDDYPVFLKHP--NLSAYMGRRLSG 236
A+ PA L G+A+KG I VG AD+V + P+ F + P + Y GRRL G
Sbjct: 408 AQRPAELMGLATKGRIQVGYDADLVAFEPD----------TFQRVPASDGGPYRGRRLQG 457
Query: 235 KVLDTFVRGNLVFKDGKHAPAACGVPILA 149
+V T++ G V D + P+ G P+L+
Sbjct: 458 RVTGTWLCGIPVPSDADNDPSPRGGPLLS 486
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 374,732,242
Number of Sequences: 1393205
Number of extensions: 7616543
Number of successful extensions: 20479
Number of sequences better than 10.0: 176
Number of HSP's better than 10.0 without gapping: 19897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20457
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 6789548448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
