Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003128A_C01 KMC003128A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S72485 peptidylprolyl isomerase (EC 5.2.1.8) ROF1 - Arabido... 118 4e-26
gb|AAB82061.1| rof1 [Arabidopsis thaliana] 118 4e-26
ref|NP_189160.2| peptidylprolyl isomerase (ROF1); protein id: At... 118 5e-26
sp|Q43207|FKB7_WHEAT 70 kDa peptidylprolyl isomerase (Peptidylpr... 107 7e-23
pir||T06489 probable peptidylprolyl isomerase (EC 5.2.1.8) FKBP7... 102 2e-21
>pir||S72485 peptidylprolyl isomerase (EC 5.2.1.8) ROF1 - Arabidopsis thaliana
gi|1373396|gb|AAB82062.1| rof1 [Arabidopsis thaliana]
Length = 551
Score = 118 bits (296), Expect = 4e-26
Identities = 56/72 (77%), Positives = 69/72 (95%)
Frame = -2
Query: 542 ESTNVKALYRRAQAYIPLADLDLAEFDIQKALEIDPNHRDVQLEYKTLKEKMKEFHQKEA 363
ESTNVKALYRRAQAY+ L+DLDLAEFD++KALEIDPN+R+V+LE K LKEKMKEF++KEA
Sbjct: 479 ESTNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFNKKEA 538
Query: 362 KFYGNMFSQMSQ 327
KFYGNMF+++S+
Sbjct: 539 KFYGNMFAKLSK 550
>gb|AAB82061.1| rof1 [Arabidopsis thaliana]
Length = 551
Score = 118 bits (296), Expect = 4e-26
Identities = 56/72 (77%), Positives = 69/72 (95%)
Frame = -2
Query: 542 ESTNVKALYRRAQAYIPLADLDLAEFDIQKALEIDPNHRDVQLEYKTLKEKMKEFHQKEA 363
ESTNVKALYRRAQAY+ L+DLDLAEFD++KALEIDPN+R+V+LE K LKEKMKEF++KEA
Sbjct: 479 ESTNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFNKKEA 538
Query: 362 KFYGNMFSQMSQ 327
KFYGNMF+++S+
Sbjct: 539 KFYGNMFAKLSK 550
>ref|NP_189160.2| peptidylprolyl isomerase (ROF1); protein id: At3g25230.1
[Arabidopsis thaliana] gi|9294180|dbj|BAB02082.1|
peptidylprolyl isomerase; FK506-binding protein
[Arabidopsis thaliana]
Length = 555
Score = 118 bits (295), Expect = 5e-26
Identities = 56/71 (78%), Positives = 68/71 (94%)
Frame = -2
Query: 542 ESTNVKALYRRAQAYIPLADLDLAEFDIQKALEIDPNHRDVQLEYKTLKEKMKEFHQKEA 363
ESTNVKALYRRAQAY+ L+DLDLAEFD++KALEIDPN+R+V+LE K LKEKMKEF++KEA
Sbjct: 479 ESTNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFNKKEA 538
Query: 362 KFYGNMFSQMS 330
KFYGNMF+++S
Sbjct: 539 KFYGNMFAKLS 549
>sp|Q43207|FKB7_WHEAT 70 kDa peptidylprolyl isomerase (Peptidylprolyl cis-trans
isomerase) (PPiase) (Rotamase) gi|1076772|pir||S55383
peptidylprolyl isomerase (EC 5.2.1.8) - wheat
gi|854626|emb|CAA60505.1| peptidylprolyl isomerase
[Triticum aestivum]
Length = 559
Score = 107 bits (268), Expect = 7e-23
Identities = 52/72 (72%), Positives = 64/72 (88%)
Frame = -2
Query: 542 ESTNVKALYRRAQAYIPLADLDLAEFDIQKALEIDPNHRDVQLEYKTLKEKMKEFHQKEA 363
+S NVKALYRRAQAY LADL+LAE DI+KALEIDP +RDV+L YKTLKEK+KE ++K+A
Sbjct: 480 DSRNVKALYRRAQAYTQLADLELAEVDIKKALEIDPENRDVKLTYKTLKEKIKEINKKDA 539
Query: 362 KFYGNMFSQMSQ 327
KFY NMFS+M++
Sbjct: 540 KFYSNMFSKMTK 551
>pir||T06489 probable peptidylprolyl isomerase (EC 5.2.1.8) FKBP77 - wheat
gi|1915960|emb|CAA68913.1| peptidylprolyl isomerase
[Triticum aestivum]
Length = 568
Score = 102 bits (255), Expect = 2e-21
Identities = 46/75 (61%), Positives = 66/75 (87%)
Frame = -2
Query: 542 ESTNVKALYRRAQAYIPLADLDLAEFDIQKALEIDPNHRDVQLEYKTLKEKMKEFHQKEA 363
ESTNVKALYRRAQAY L DL+LAE DI+KALEIDP++R+V++ YK LK+K++E+++++A
Sbjct: 478 ESTNVKALYRRAQAYTELVDLELAELDIKKALEIDPDNREVKVAYKALKDKLREYNKRDA 537
Query: 362 KFYGNMFSQMSQLDS 318
KFYGNMF++ + ++
Sbjct: 538 KFYGNMFAKWRKTEN 552
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,173,393
Number of Sequences: 1393205
Number of extensions: 12037567
Number of successful extensions: 32034
Number of sequences better than 10.0: 188
Number of HSP's better than 10.0 without gapping: 30129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31798
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
