Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003126A_C01 KMC003126A_c01
(481 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200099.1| putative protein; protein id: At5g52870.1, supp... 70 2e-11
dbj|BAC42111.1| unknown protein [Arabidopsis thaliana] 59 3e-08
ref|NP_176591.1| hypothetical protein; protein id: At1g64080.1 [... 59 3e-08
dbj|BAB32722.1| P0492F05.24 [Oryza sativa (japonica cultivar-gro... 52 3e-06
ref|NP_224718.1| CT433 hypothetical protein [Chlamydophila pneum... 34 0.72
>ref|NP_200099.1| putative protein; protein id: At5g52870.1, supported by cDNA:
gi_15028096, supported by cDNA: gi_20258914 [Arabidopsis
thaliana] gi|10177101|dbj|BAB10435.1|
gb|AAF24565.1~gene_id:MXC20.9~similar to unknown protein
[Arabidopsis thaliana] gi|15028097|gb|AAK76579.1|
unknown protein [Arabidopsis thaliana]
gi|20258915|gb|AAM14151.1| unknown protein [Arabidopsis
thaliana]
Length = 326
Score = 69.7 bits (169), Expect = 2e-11
Identities = 36/75 (48%), Positives = 48/75 (64%)
Frame = -1
Query: 481 QGSFPVGMRVVSKHLGKRRSAGTVVGVNSPANRSNDSVQQHDDGIQSAILHCQRSFNSRE 302
+ + P GMR V + LGK RSA +G SPANR ++S+Q DGIQSAILHC++SF+
Sbjct: 210 RSNIPSGMRSVRRQLGKSRSASAAIGGMSPANRIDESLQVQQDGIQSAILHCKKSFHGSR 269
Query: 301 CSIALSADGSMKSAR 257
S LS S S++
Sbjct: 270 ESSLLSRSTSESSSQ 284
>dbj|BAC42111.1| unknown protein [Arabidopsis thaliana]
Length = 411
Score = 58.9 bits (141), Expect = 3e-08
Identities = 31/66 (46%), Positives = 40/66 (59%), Gaps = 10/66 (15%)
Frame = -1
Query: 475 SFPVGMRVVSKHLGKRRSAGTV----------VGVNSPANRSNDSVQQHDDGIQSAILHC 326
+ P G++VV KHLGK RS+ + V S + R +DS+ Q D IQSAILHC
Sbjct: 325 NIPAGLKVVRKHLGKSRSSSSTATTPSSTTATVTTQSESRRRDDSLLQQQDSIQSAILHC 384
Query: 325 QRSFNS 308
+RSFNS
Sbjct: 385 KRSFNS 390
>ref|NP_176591.1| hypothetical protein; protein id: At1g64080.1 [Arabidopsis
thaliana] gi|25404922|pir||E96665 protein F22C12.16
[imported] - Arabidopsis thaliana
gi|6692100|gb|AAF24565.1|AC007764_7 F22C12.16
[Arabidopsis thaliana]
Length = 411
Score = 58.9 bits (141), Expect = 3e-08
Identities = 31/66 (46%), Positives = 40/66 (59%), Gaps = 10/66 (15%)
Frame = -1
Query: 475 SFPVGMRVVSKHLGKRRSAGTV----------VGVNSPANRSNDSVQQHDDGIQSAILHC 326
+ P G++VV KHLGK RS+ + V S + R +DS+ Q D IQSAILHC
Sbjct: 325 NIPAGLKVVRKHLGKSRSSSSTATTPSSTTATVTTQSESRRRDDSLLQQQDSIQSAILHC 384
Query: 325 QRSFNS 308
+RSFNS
Sbjct: 385 KRSFNS 390
>dbj|BAB32722.1| P0492F05.24 [Oryza sativa (japonica cultivar-group)]
gi|20804415|dbj|BAB92113.1| P0443E07.16 [Oryza sativa
(japonica cultivar-group)]
Length = 411
Score = 52.0 bits (123), Expect = 3e-06
Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 13/89 (14%)
Frame = -1
Query: 481 QGSFPVGMRVVSKHLGKRRSAGTVVGVN-SPA------------NRSNDSVQQHDDGIQS 341
+ S P G++ V K LGK RSA + V SP+ R +DS+ Q DGIQS
Sbjct: 307 RASVPAGLKQVCKRLGKSRSASSAVAAAPSPSLPPPPSTAGQQPQRRDDSLLQLQDGIQS 366
Query: 340 AILHCQRSFNSRECSIALSADGSMKSARN 254
AI HC+RSFN+ + SM R+
Sbjct: 367 AIAHCKRSFNASKVGSESPLLRSMSDTRD 395
>ref|NP_224718.1| CT433 hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|15836053|ref|NP_300577.1| CT433 hypothetical protein
[Chlamydophila pneumoniae J138]
gi|16752520|ref|NP_444782.1| conserved hypothetical
protein [Chlamydophila pneumoniae AR39]
gi|7468109|pir||A72068 conserved hypothetical protein
CP0231 [imported] - Chlamydophila pneumoniae (strains
CWL029 and AR39) gi|25351794|pir||F86555 CT433
hypothetical protein [imported] - Chlamydophila
pneumoniae (strain J138) gi|4376811|gb|AAD18662.1| CT433
hypothetical protein [Chlamydophila pneumoniae CWL029]
gi|7189159|gb|AAF38097.1| conserved hypothetical protein
[Chlamydophila pneumoniae AR39]
gi|8978893|dbj|BAA98728.1| CT433 hypothetical protein
[Chlamydophila pneumoniae J138]
Length = 223
Score = 34.3 bits (77), Expect = 0.72
Identities = 18/47 (38%), Positives = 31/47 (65%)
Frame = +2
Query: 122 LPLISLFLYKKNTNYKKHFSIQFFFSSSM*LLSSPSSSHFILK*VSS 262
LP+++LF Y K+T K ++QF ++ +L+SPSS+H L ++S
Sbjct: 20 LPILTLFPYAKSTPQNKR-ALQFLPQATHVILTSPSSTHLFLSRMTS 65
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 422,752,668
Number of Sequences: 1393205
Number of extensions: 8891160
Number of successful extensions: 27736
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 24570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27088
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
