Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003121A_C01 KMC003121A_c01
(647 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52144 auxin-induced protein IAA18 [imported] - Arabidopsis... 113 3e-24
ref|NP_175607.1| auxin regulated protein IAA18, putative; protei... 113 3e-24
gb|AAM65943.1| auxin regulated protein IAA18, putative [Arabidop... 113 3e-24
ref|NP_188271.1| phytochrome-associated protein 1 (PAP1); protei... 112 3e-24
gb|AAM65282.1| phytochrome-associated protein 1 (PAP1) [Arabidop... 112 3e-24
>pir||T52144 auxin-induced protein IAA18 [imported] - Arabidopsis thaliana
(fragment) gi|2618725|gb|AAB84355.1| IAA18 [Arabidopsis
thaliana]
Length = 236
Score = 113 bits (282), Expect = 3e-24
Identities = 58/81 (71%), Positives = 66/81 (80%)
Frame = -1
Query: 647 LSSAVDALFRGLLAAQRDASAGGVHNKPEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGD 468
LS VD LFRGLLAAQRD + E+EK ITGLLDG+GEYTL YEDNEGD+MLVGD
Sbjct: 145 LSFTVDKLFRGLLAAQRDFPSS-----IEDEKPITGLLDGNGEYTLTYEDNEGDKMLVGD 199
Query: 467 VPWHMFVSTVKRLRVLKSSEL 405
VPW MFVS+VKRLRV+K+SE+
Sbjct: 200 VPWQMFVSSVKRLRVIKTSEI 220
>ref|NP_175607.1| auxin regulated protein IAA18, putative; protein id: At1g51950.1,
supported by cDNA: 6493., supported by cDNA:
gi_14194114, supported by cDNA: gi_15810072 [Arabidopsis
thaliana] gi|11386629|sp|O24408|AXII_ARATH
Auxin-responsive protein IAA18 (Indoleacetic
acid-induced protein 18) gi|25405511|pir||H96558 IAA18
[imported] - Arabidopsis thaliana
gi|9802794|gb|AAF99863.1|AC015448_13 IAA18 [Arabidopsis
thaliana] gi|14194115|gb|AAK56252.1|AF367263_1
At1g51950/T14L22_14 [Arabidopsis thaliana]
gi|15810073|gb|AAL06962.1| At1g51950/T14L22_14
[Arabidopsis thaliana]
Length = 267
Score = 113 bits (282), Expect = 3e-24
Identities = 58/81 (71%), Positives = 66/81 (80%)
Frame = -1
Query: 647 LSSAVDALFRGLLAAQRDASAGGVHNKPEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGD 468
LS VD LFRGLLAAQRD + E+EK ITGLLDG+GEYTL YEDNEGD+MLVGD
Sbjct: 176 LSFTVDKLFRGLLAAQRDFPSS-----IEDEKPITGLLDGNGEYTLTYEDNEGDKMLVGD 230
Query: 467 VPWHMFVSTVKRLRVLKSSEL 405
VPW MFVS+VKRLRV+K+SE+
Sbjct: 231 VPWQMFVSSVKRLRVIKTSEI 251
>gb|AAM65943.1| auxin regulated protein IAA18, putative [Arabidopsis thaliana]
Length = 267
Score = 113 bits (282), Expect = 3e-24
Identities = 58/81 (71%), Positives = 66/81 (80%)
Frame = -1
Query: 647 LSSAVDALFRGLLAAQRDASAGGVHNKPEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGD 468
LS VD LFRGLLAAQRD + E+EK ITGLLDG+GEYTL YEDNEGD+MLVGD
Sbjct: 176 LSFTVDKLFRGLLAAQRDFPSS-----IEDEKPITGLLDGNGEYTLTYEDNEGDKMLVGD 230
Query: 467 VPWHMFVSTVKRLRVLKSSEL 405
VPW MFVS+VKRLRV+K+SE+
Sbjct: 231 VPWQMFVSSVKRLRVIKTSEI 251
>ref|NP_188271.1| phytochrome-associated protein 1 (PAP1); protein id: At3g16500.1,
supported by cDNA: 38146., supported by cDNA:
gi_12083211, supported by cDNA: gi_14423421, supported
by cDNA: gi_18377501, supported by cDNA: gi_4093154
[Arabidopsis thaliana] gi|9279649|dbj|BAB01149.1|
phytochrome-associated protein 1 [Arabidopsis thaliana]
gi|12083212|gb|AAG48765.1|AF332401_1 putative
phytochrome-associated protein 1 [Arabidopsis thaliana]
gi|14423422|gb|AAK62393.1|AF386948_1
phytochrome-associated protein 1 [Arabidopsis thaliana]
gi|18377502|gb|AAL66917.1| phytochrome-associated
protein 1 [Arabidopsis thaliana]
Length = 269
Score = 112 bits (281), Expect = 3e-24
Identities = 59/81 (72%), Positives = 64/81 (78%)
Frame = -1
Query: 647 LSSAVDALFRGLLAAQRDASAGGVHNKPEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGD 468
LS VD LFRGLLAAQRD S G EEK I GLLDG GE+TL YEDNEGD+MLVGD
Sbjct: 178 LSFVVDKLFRGLLAAQRDISDG-----QGEEKPIIGLLDGKGEFTLTYEDNEGDKMLVGD 232
Query: 467 VPWHMFVSTVKRLRVLKSSEL 405
VPW MFVS+VKRLRV+KSSE+
Sbjct: 233 VPWQMFVSSVKRLRVIKSSEI 253
>gb|AAM65282.1| phytochrome-associated protein 1 (PAP1) [Arabidopsis thaliana]
Length = 269
Score = 112 bits (281), Expect = 3e-24
Identities = 59/81 (72%), Positives = 64/81 (78%)
Frame = -1
Query: 647 LSSAVDALFRGLLAAQRDASAGGVHNKPEEEKAITGLLDGSGEYTLVYEDNEGDRMLVGD 468
LS VD LFRGLLAAQRD S G EEK I GLLDG GE+TL YEDNEGD+MLVGD
Sbjct: 178 LSFVVDKLFRGLLAAQRDISDG-----QGEEKPIIGLLDGKGEFTLTYEDNEGDKMLVGD 232
Query: 467 VPWHMFVSTVKRLRVLKSSEL 405
VPW MFVS+VKRLRV+KSSE+
Sbjct: 233 VPWQMFVSSVKRLRVIKSSEI 253
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 526,825,778
Number of Sequences: 1393205
Number of extensions: 10745714
Number of successful extensions: 23534
Number of sequences better than 10.0: 180
Number of HSP's better than 10.0 without gapping: 22911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23522
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27576232529
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
