Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003119A_C01 KMC003119A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190012.1| CCR4-associated factor 1-like protein; protein ... 241 4e-63
ref|NP_197617.1| CCR4-associated factor-like protein; protein id... 240 9e-63
ref|NP_196657.1| CCR4-ASSOCIATED FACTOR -like protein; protein ... 172 3e-42
gb|AAK92792.1| putative CCR4-associated factor [Arabidopsis thal... 170 1e-41
ref|NP_178193.1| CCR4-associated factor, putative\0CCR4-associat... 169 1e-41
>ref|NP_190012.1| CCR4-associated factor 1-like protein; protein id: At3g44260.1
[Arabidopsis thaliana] gi|11288396|pir||T49142
CCR4-associated factor 1-like protein - Arabidopsis
thaliana gi|7649377|emb|CAB88994.1| CCR4-associated
factor 1-like protein [Arabidopsis thaliana]
gi|15292829|gb|AAK92783.1| putative CCR4-associated
factor 1 [Arabidopsis thaliana]
gi|21436313|gb|AAM51295.1| putative CCR4-associated
factor 1 [Arabidopsis thaliana]
Length = 280
Score = 241 bits (615), Expect = 4e-63
Identities = 117/162 (72%), Positives = 135/162 (83%), Gaps = 1/162 (0%)
Frame = -3
Query: 536 ARHAYAPDSIALLCRQGIDFARNAAWGVDSARFAQLMMSSGLVCNDAVSWVTFHSAYDFG 357
AR A+APDSI LL RQGIDF RN GV+S RFA+LMMSSGLVCN+ VSWVTFHSAYDFG
Sbjct: 117 ARDAHAPDSIELLRRQGIDFERNCRDGVESERFAELMMSSGLVCNEEVSWVTFHSAYDFG 176
Query: 356 YLVKILTRRSLPTRLDEFLKIVRVFFGNNIYDIKHVIGFC-NSLYGGLDRVAQSLNVNRA 180
YL+KILTRR LP L EF +++RV FG +YD+KH++ FC L+GGLDRVA++L VNRA
Sbjct: 177 YLMKILTRRELPGALGEFKRVMRVLFGERVYDVKHMMKFCERRLFGGLDRVARTLEVNRA 236
Query: 179 VGKCHQAGSDSLLTWHAFQKIRDAYFV*DGHKKHVNVLYGLE 54
VGKCHQAGSDSLLTWHAFQ++RD YFV DG +KH VLYGLE
Sbjct: 237 VGKCHQAGSDSLLTWHAFQRMRDLYFVQDGPEKHAGVLYGLE 278
>ref|NP_197617.1| CCR4-associated factor-like protein; protein id: At5g22250.1,
supported by cDNA: gi_17381057 [Arabidopsis thaliana]
gi|9757805|dbj|BAB08323.1| CCR4-associated factor-like
protein [Arabidopsis thaliana]
gi|17381058|gb|AAL36341.1| putative CCR4-associated
factor [Arabidopsis thaliana] gi|25054979|gb|AAN71961.1|
putative CCR4-associated factor [Arabidopsis thaliana]
Length = 278
Score = 240 bits (612), Expect = 9e-63
Identities = 116/161 (72%), Positives = 133/161 (82%), Gaps = 1/161 (0%)
Frame = -3
Query: 533 RHAYAPDSIALLCRQGIDFARNAAWGVDSARFAQLMMSSGLVCNDAVSWVTFHSAYDFGY 354
R +APDSI LL R GIDF RN GV+S RFA+LMMSSGL+CN++VSWVTFHSAYDFGY
Sbjct: 116 RDPHAPDSIELLRRHGIDFERNRREGVESERFAELMMSSGLICNESVSWVTFHSAYDFGY 175
Query: 353 LVKILTRRSLPTRLDEFLKIVRVFFGNNIYDIKHVIGFCNS-LYGGLDRVAQSLNVNRAV 177
LVKILTRR LP L EFL ++R FFG+ +YD+KH++ FC LYGGLDRVA+SL VNRAV
Sbjct: 176 LVKILTRRQLPVALREFLGLLRAFFGDRVYDVKHIMRFCEQRLYGGLDRVARSLEVNRAV 235
Query: 176 GKCHQAGSDSLLTWHAFQKIRDAYFV*DGHKKHVNVLYGLE 54
GKCHQAGSDSLLTW AFQ++RD YFV DG +KH VLYGLE
Sbjct: 236 GKCHQAGSDSLLTWQAFQRMRDLYFVEDGAEKHAGVLYGLE 276
>ref|NP_196657.1| CCR4-ASSOCIATED FACTOR -like protein; protein id: At5g10960.1,
supported by cDNA: gi_15292842 [Arabidopsis thaliana]
gi|11288398|pir||T50805 CCR4-ASSOCIATED FACTOR-like
protein - Arabidopsis thaliana
gi|8979730|emb|CAB96851.1| CCR4-ASSOCIATED FACTOR-like
protein [Arabidopsis thaliana]
gi|23296319|gb|AAN13040.1| putative CCR4-associated
factor [Arabidopsis thaliana]
Length = 277
Score = 172 bits (435), Expect = 3e-42
Identities = 87/159 (54%), Positives = 116/159 (72%)
Frame = -3
Query: 524 YAPDSIALLCRQGIDFARNAAWGVDSARFAQLMMSSGLVCNDAVSWVTFHSAYDFGYLVK 345
YA +SI LL + GIDF +N G+D RF +LMMSSG+V NDA+SWVTFH YDFGYLVK
Sbjct: 113 YASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVK 172
Query: 344 ILTRRSLPTRLDEFLKIVRVFFGNNIYDIKHVIGFCNSLYGGLDRVAQSLNVNRAVGKCH 165
+LT + LP + +F K++ V+F +YDIKH++ FCN L+GGL+R+A+ + V R VG CH
Sbjct: 173 LLTCKELPLKQADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICH 230
Query: 164 QAGSDSLLTWHAFQKIRDAYFV*DGHKKHVNVLYGLESE 48
QAGSDSLLT +F+K+++ YF +K+ VLYGL E
Sbjct: 231 QAGSDSLLTLGSFRKLKERYFP-GSTEKYTGVLYGLGVE 268
>gb|AAK92792.1| putative CCR4-associated factor [Arabidopsis thaliana]
Length = 277
Score = 170 bits (430), Expect = 1e-41
Identities = 87/159 (54%), Positives = 115/159 (71%)
Frame = -3
Query: 524 YAPDSIALLCRQGIDFARNAAWGVDSARFAQLMMSSGLVCNDAVSWVTFHSAYDFGYLVK 345
YA +SI LL + GIDF +N G+D RF +LMMSSG+V NDA+SWVTFH YDFGYLVK
Sbjct: 113 YASESIELLRQCGIDFKKNIEKGIDVVRFGELMMSSGIVLNDAISWVTFHGGYDFGYLVK 172
Query: 344 ILTRRSLPTRLDEFLKIVRVFFGNNIYDIKHVIGFCNSLYGGLDRVAQSLNVNRAVGKCH 165
+LT + LP + +F K++ V+F +YDIKH++ FCN L+GGL+R+A+ + V R VG CH
Sbjct: 173 LLTCKELPLKQADFFKLLYVYF-PTVYDIKHLMTFCNGLFGGLNRLAELMGVER-VGICH 230
Query: 164 QAGSDSLLTWHAFQKIRDAYFV*DGHKKHVNVLYGLESE 48
QAGSDSLLT +F+K ++ YF +K+ VLYGL E
Sbjct: 231 QAGSDSLLTLGSFRKPKERYFP-GSTEKYTGVLYGLGVE 268
>ref|NP_178193.1| CCR4-associated factor, putative\0CCR4-associated factor, putative;
protein id: At1g80780.1, supported by cDNA: gi_17979380,
supported by cDNA: gi_20465784 [Arabidopsis thaliana]
gi|25363292|pir||D96840 hypothetical protein F23A5.13
[imported] - Arabidopsis thaliana
gi|6503290|gb|AAF14666.1|AC011713_14 Similar to
gb|U21855 CCR4-associated factor 1 (CAF1) from Mus
musculus. ESTs gb|AAA394972, gb|AA585812 and gb|H77015
come from this gene. [Arabidopsis thaliana]
gi|17979381|gb|AAL49916.1| putative CCR4-associated
factorCCR4-associated factor [Arabidopsis thaliana]
gi|20465785|gb|AAM20381.1| putative CCR4-associated
factor [Arabidopsis thaliana]
Length = 274
Score = 169 bits (429), Expect = 1e-41
Identities = 88/159 (55%), Positives = 118/159 (73%)
Frame = -3
Query: 524 YAPDSIALLCRQGIDFARNAAWGVDSARFAQLMMSSGLVCNDAVSWVTFHSAYDFGYLVK 345
+A DSI LL + GID A+N G+DS RFA+L+MSSG+V N+ V WVTFHS YDFGYL+K
Sbjct: 113 FALDSIELLKQSGIDLAKNTLDGIDSKRFAELLMSSGIVLNENVHWVTFHSGYDFGYLLK 172
Query: 344 ILTRRSLPTRLDEFLKIVRVFFGNNIYDIKHVIGFCNSLYGGLDRVAQSLNVNRAVGKCH 165
+LT ++LP +F K++ V+F +YDIKH++ FCNSL+GGL+++A+ L V R VG CH
Sbjct: 173 LLTCQNLPDSQTDFFKLINVYF-PTVYDIKHLMKFCNSLHGGLNKLAELLEVER-VGICH 230
Query: 164 QAGSDSLLTWHAFQKIRDAYFV*DGHKKHVNVLYGLESE 48
QAGSDSLLT F+K+++ +FV H K+ VLYGL E
Sbjct: 231 QAGSDSLLTSCTFRKLKENFFVGPLH-KYSGVLYGLGVE 268
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 443,831,033
Number of Sequences: 1393205
Number of extensions: 9061759
Number of successful extensions: 21811
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 21266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21719
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
