Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003116A_C01 KMC003116A_c01
(661 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T02301 aldehyde dehydrogenase (NAD) (EC 1.2.1.3) 2A precurs... 148 4e-60
gb|AAO72532.1| aldehyde dehydrogenase 1 precursor [Lotus cornicu... 133 7e-56
gb|AAK58370.1|AF269064_1 T-cytoplasm male sterility restorer fac... 134 1e-55
gb|AAL77005.1| aldehyde dehydrogenase [Allium cepa] 136 2e-55
pir||T03983 rf2 nuclear restorer protein - maize gi|1421730|gb|A... 133 3e-55
>pir||T02301 aldehyde dehydrogenase (NAD) (EC 1.2.1.3) 2A precursor,
mitochondrial - common tobacco
gi|1743354|emb|CAA71003.1| aldehyde dehydrogenase (NAD+)
[Nicotiana tabacum]
Length = 542
Score = 148 bits (374), Expect(2) = 4e-60
Identities = 69/75 (92%), Positives = 73/75 (97%)
Frame = -1
Query: 466 LAAGIFTKDIDTANTLTRALKVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYL 287
LAAG+FT++IDTANTLTRAL+VGTVWVNCFDTFDA IPFGGYKMSG GREKGEYSLKNYL
Sbjct: 468 LAAGVFTQNIDTANTLTRALRVGTVWVNCFDTFDATIPFGGYKMSGHGREKGEYSLKNYL 527
Query: 286 QVKAVVTPLKNPAWL 242
QVKAVVTPLKNPAWL
Sbjct: 528 QVKAVVTPLKNPAWL 542
Score = 105 bits (262), Expect(2) = 4e-60
Identities = 47/64 (73%), Positives = 62/64 (96%)
Frame = -3
Query: 659 NGATLETGGDRLGDKGFYIQPTVFSNVQDDMVIAKEEIFGPVPTILKFKDLREVIQRANN 480
+GATLETGG+RLG++G+YI+PTVFSNV+DDM+IA++EIFGPV +ILKFKD+ +VI+RANN
Sbjct: 404 SGATLETGGERLGERGYYIKPTVFSNVKDDMLIAQDEIFGPVQSILKFKDVDDVIRRANN 463
Query: 479 TRYG 468
+RYG
Sbjct: 464 SRYG 467
>gb|AAO72532.1| aldehyde dehydrogenase 1 precursor [Lotus corniculatus]
Length = 542
Score = 133 bits (335), Expect(2) = 7e-56
Identities = 62/75 (82%), Positives = 68/75 (90%)
Frame = -1
Query: 466 LAAGIFTKDIDTANTLTRALKVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYL 287
LAAG+FT+++ TANTL RAL+ GTVW+NCFD FDAAIPFGGYKMSG GREKG YSL NYL
Sbjct: 468 LAAGVFTQNLATANTLMRALRAGTVWINCFDVFDAAIPFGGYKMSGIGREKGIYSLHNYL 527
Query: 286 QVKAVVTPLKNPAWL 242
QVKAVVTPLKNPAWL
Sbjct: 528 QVKAVVTPLKNPAWL 542
Score = 106 bits (264), Expect(2) = 7e-56
Identities = 49/64 (76%), Positives = 58/64 (90%)
Frame = -3
Query: 659 NGATLETGGDRLGDKGFYIQPTVFSNVQDDMVIAKEEIFGPVPTILKFKDLREVIQRANN 480
+ ATLE GGDRLG KGFY+QPTVFSNVQDDM+IA++EIFGPV TI KFK++ EVI+RAN+
Sbjct: 404 SNATLECGGDRLGSKGFYVQPTVFSNVQDDMLIAQDEIFGPVQTIFKFKEIDEVIRRANS 463
Query: 479 TRYG 468
TRYG
Sbjct: 464 TRYG 467
>gb|AAK58370.1|AF269064_1 T-cytoplasm male sterility restorer factor 2 [Zea mays]
Length = 549
Score = 134 bits (338), Expect(2) = 1e-55
Identities = 63/75 (84%), Positives = 67/75 (89%)
Frame = -1
Query: 466 LAAGIFTKDIDTANTLTRALKVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYL 287
LAAG+FT +DTANTLTRAL+ GTVWVNCFD FDAAIPFGGYKMSG GREKG SLKNYL
Sbjct: 475 LAAGVFTNSLDTANTLTRALRAGTVWVNCFDVFDAAIPFGGYKMSGMGREKGVDSLKNYL 534
Query: 286 QVKAVVTPLKNPAWL 242
QVKAVVTP+KN AWL
Sbjct: 535 QVKAVVTPIKNAAWL 549
Score = 104 bits (259), Expect(2) = 1e-55
Identities = 50/63 (79%), Positives = 57/63 (90%)
Frame = -3
Query: 656 GATLETGGDRLGDKGFYIQPTVFSNVQDDMVIAKEEIFGPVPTILKFKDLREVIQRANNT 477
GATL TGGDRLGDKGFYIQPT+FS+VQD M IA+EEIFGPV +ILKFKDL EVI+RAN +
Sbjct: 412 GATLVTGGDRLGDKGFYIQPTIFSDVQDGMKIAQEEIFGPVQSILKFKDLNEVIKRANAS 471
Query: 476 RYG 468
+YG
Sbjct: 472 QYG 474
>gb|AAL77005.1| aldehyde dehydrogenase [Allium cepa]
Length = 230
Score = 136 bits (343), Expect(2) = 2e-55
Identities = 65/75 (86%), Positives = 68/75 (90%)
Frame = -1
Query: 466 LAAGIFTKDIDTANTLTRALKVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYL 287
LAAG+FT +ID ANTLTRAL+VGTVWVNCFD FDAAIPFGGYKMSGQGREKG SLK YL
Sbjct: 156 LAAGVFTSNIDKANTLTRALRVGTVWVNCFDVFDAAIPFGGYKMSGQGREKGIDSLKGYL 215
Query: 286 QVKAVVTPLKNPAWL 242
Q KAVVTPLKNPAWL
Sbjct: 216 QTKAVVTPLKNPAWL 230
Score = 101 bits (252), Expect(2) = 2e-55
Identities = 47/63 (74%), Positives = 57/63 (89%)
Frame = -3
Query: 656 GATLETGGDRLGDKGFYIQPTVFSNVQDDMVIAKEEIFGPVPTILKFKDLREVIQRANNT 477
GA+L TGG+R+G KG+YIQPT+FS+V+DDMVIAKEEIFGPV +ILKF DL EVI+RAN +
Sbjct: 93 GASLVTGGERIGSKGYYIQPTIFSDVKDDMVIAKEEIFGPVQSILKFNDLNEVIRRANAS 152
Query: 476 RYG 468
RYG
Sbjct: 153 RYG 155
>pir||T03983 rf2 nuclear restorer protein - maize gi|1421730|gb|AAC49371.1| RF2
gi|12004294|gb|AAG43988.1|AF215823_1 T cytoplasm male
sterility restorer factor 2 [Zea mays]
Length = 549
Score = 133 bits (335), Expect(2) = 3e-55
Identities = 63/75 (84%), Positives = 67/75 (89%)
Frame = -1
Query: 466 LAAGIFTKDIDTANTLTRALKVGTVWVNCFDTFDAAIPFGGYKMSGQGREKGEYSLKNYL 287
LAAG+FT +DTANTLTRAL+ GTVWVNCFD FDAAIPFGGYKMSG GREKG SLKNYL
Sbjct: 475 LAAGVFTNSLDTANTLTRALRAGTVWVNCFDVFDAAIPFGGYKMSGIGREKGVDSLKNYL 534
Query: 286 QVKAVVTPLKNPAWL 242
QVKAVVTP+KN AWL
Sbjct: 535 QVKAVVTPIKNAAWL 549
Score = 104 bits (259), Expect(2) = 3e-55
Identities = 50/63 (79%), Positives = 57/63 (90%)
Frame = -3
Query: 656 GATLETGGDRLGDKGFYIQPTVFSNVQDDMVIAKEEIFGPVPTILKFKDLREVIQRANNT 477
GATL TGGDRLGDKGFYIQPT+FS+VQD M IA+EEIFGPV +ILKFKDL EVI+RAN +
Sbjct: 412 GATLVTGGDRLGDKGFYIQPTIFSDVQDGMKIAQEEIFGPVQSILKFKDLNEVIKRANAS 471
Query: 476 RYG 468
+YG
Sbjct: 472 QYG 474
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,993,533
Number of Sequences: 1393205
Number of extensions: 12134634
Number of successful extensions: 32322
Number of sequences better than 10.0: 1314
Number of HSP's better than 10.0 without gapping: 29664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32151
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
