Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003115A_C01 KMC003115A_c01
(692 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566409.1| expressed protein; protein id: At3g12030.1, sup... 203 2e-51
gb|AAM62913.1| unknown [Arabidopsis thaliana] 202 3e-51
gb|AAM63240.1| unknown [Arabidopsis thaliana] 198 5e-50
ref|NP_196284.1| putative protein; protein id: At5g06660.1, supp... 198 5e-50
gb|AAC25388.1| unknown [Homo sapiens] 113 2e-24
>ref|NP_566409.1| expressed protein; protein id: At3g12030.1, supported by cDNA:
17143. [Arabidopsis thaliana]
gi|10998144|dbj|BAB03115.1| gene_id:MEC18.16~unknown
protein [Arabidopsis thaliana]
gi|12322003|gb|AAG51041.1|AC069473_3 unknown protein;
47077-47667 [Arabidopsis thaliana]
gi|26451620|dbj|BAC42907.1| unknown protein [Arabidopsis
thaliana] gi|28973219|gb|AAO63934.1| unknown protein
[Arabidopsis thaliana]
Length = 196
Score = 203 bits (516), Expect = 2e-51
Identities = 103/118 (87%), Positives = 108/118 (91%), Gaps = 2/118 (1%)
Frame = -2
Query: 691 KIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMK 512
KIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLPF P +V K
Sbjct: 79 KIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHPITIVKK 138
Query: 511 MSHRGLQGTDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGA--SAGLFPMPDPKTS 344
MSHRGL+G DPTDCSMAFLY LCSISIRTNLQKFLGF+PPRGA + GLFPMPDPKT+
Sbjct: 139 MSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAGGLFPMPDPKTN 196
>gb|AAM62913.1| unknown [Arabidopsis thaliana]
Length = 196
Score = 202 bits (515), Expect = 3e-51
Identities = 103/118 (87%), Positives = 108/118 (91%), Gaps = 2/118 (1%)
Frame = -2
Query: 691 KIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMK 512
KIDRVETSLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLPF P +V K
Sbjct: 79 KIDRVETSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHPITIVNK 138
Query: 511 MSHRGLQGTDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGA--SAGLFPMPDPKTS 344
MSHRGL+G DPTDCSMAFLY LCSISIRTNLQKFLGF+PPRGA + GLFPMPDPKT+
Sbjct: 139 MSHRGLKGDDPTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAGGLFPMPDPKTN 196
>gb|AAM63240.1| unknown [Arabidopsis thaliana]
Length = 196
Score = 198 bits (504), Expect = 5e-50
Identities = 101/118 (85%), Positives = 107/118 (90%), Gaps = 2/118 (1%)
Frame = -2
Query: 691 KIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMK 512
KIDRVE+SLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLPF P +V K
Sbjct: 79 KIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHPITIVRK 138
Query: 511 MSHRGLQGTDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGA--SAGLFPMPDPKTS 344
MSHRGL+G D TDCSMAFLY LCSISIRTNLQKFLGF+PPRGA + GLFPMPDPKT+
Sbjct: 139 MSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAGGLFPMPDPKTN 196
>ref|NP_196284.1| putative protein; protein id: At5g06660.1, supported by cDNA:
20752., supported by cDNA: gi_14532445, supported by
cDNA: gi_16974514 [Arabidopsis thaliana]
gi|10178122|dbj|BAB11415.1|
dbj|BAA86974.1~gene_id:F15M7.19~similar to unknown
protein [Arabidopsis thaliana]
gi|14532446|gb|AAK63951.1| AT5g06660/F15M7_19
[Arabidopsis thaliana] gi|16974515|gb|AAL31167.1|
AT5g06660/F15M7_19 [Arabidopsis thaliana]
Length = 196
Score = 198 bits (504), Expect = 5e-50
Identities = 101/118 (85%), Positives = 107/118 (90%), Gaps = 2/118 (1%)
Frame = -2
Query: 691 KIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMK 512
KIDRVE+SLKESSRDLSLFKFKSG VVALVLFVVFGLLNSLFEGKVVAKLPF P +V K
Sbjct: 79 KIDRVESSLKESSRDLSLFKFKSGAVVALVLFVVFGLLNSLFEGKVVAKLPFHPITIVRK 138
Query: 511 MSHRGLQGTDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGA--SAGLFPMPDPKTS 344
MSHRGL+G D TDCSMAFLY LCSISIRTNLQKFLGF+PPRGA + GLFPMPDPKT+
Sbjct: 139 MSHRGLKGDDSTDCSMAFLYLLCSISIRTNLQKFLGFSPPRGAAGAGGLFPMPDPKTN 196
>gb|AAC25388.1| unknown [Homo sapiens]
Length = 230
Score = 113 bits (283), Expect = 2e-24
Identities = 57/115 (49%), Positives = 74/115 (63%), Gaps = 2/115 (1%)
Frame = -2
Query: 691 KIDRVETSLKESSRDLSLFKFKSGGVVALVLFVVFGLLNSLFEGKVVAKLPFKPFGLVMK 512
KI+R E LK ++RDLS+ + KS + + G+ NS+F+G+VVAKLPF P +
Sbjct: 110 KIERQEEKLKNNNRDLSMVRMKSMFAIGFCFTALMGMFNSIFDGRVVAKLPFTPLSYIQG 169
Query: 511 MSHRGLQGTDPTDCSMAFLYFLCSISIRTNLQKFLGFAPPRGAS--AGLFPMPDP 353
+SHR L G D TDCS FLY LC++SIR N+QK LG AP R A+ AG F P P
Sbjct: 170 LSHRNLLGDDTTDCSFIFLYILCTMSIRQNIQKILGLAPSRAATKQAGGFLGPPP 224
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 565,679,878
Number of Sequences: 1393205
Number of extensions: 11996456
Number of successful extensions: 35496
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 34549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35483
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
