Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003114A_C01 KMC003114A_c01
(820 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T09591 probable cdc2-like protein kinase cdc2MsF - alfalfa ... 350 1e-95
emb|CAC15504.1| B2-type cyclin dependent kinase [Lycopersicon es... 322 4e-87
ref|NP_177780.1| Cyclin-dependent kinase B2;1; protein id: At1g7... 321 9e-87
gb|AAK63856.1|AF389283_1 At1g76540/F14G6_14 [Arabidopsis thalian... 321 9e-87
ref|NP_173517.1| Cyclin-dependent kinase B2;2; protein id: At1g2... 318 6e-86
>pir||T09591 probable cdc2-like protein kinase cdc2MsF - alfalfa
gi|1806146|emb|CAA65982.1| cdc2MsF [Medicago sativa]
Length = 316
Score = 350 bits (898), Expect = 1e-95
Identities = 187/249 (75%), Positives = 202/249 (81%), Gaps = 10/249 (4%)
Frame = -2
Query: 738 MEKSG----VVLSVKEAFEKLEKVGEGTYGNVYRAREKATGKIVALKKTRLHEDDEGVPP 571
MEK G VVLS KEAFEKLEKVGEGTYG VYRAREKATGKIVALKKTRLHEDDEGVPP
Sbjct: 1 MEKPGETIAVVLSAKEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDDEGVPP 60
Query: 570 TTLREVSILRMLSRDPHVVRLMDVKQGQSKEGKTVLYLVFEYMDTDLKQFIRTFRQTGPN 391
TTLREVSILRMLSRDPHVVRL+DVKQGQ+KEGKTVLYLVFEYMDTDLK+FIR+FRQTG N
Sbjct: 61 TTLREVSILRMLSRDPHVVRLLDVKQGQNKEGKTVLYLVFEYMDTDLKKFIRSFRQTGQN 120
Query: 390 VPPPPVTSLMYQLRKGVAFCHGHGILHRDLKPHHLLMDRETNMLKIADLGLARAFTVPIK 211
+PPP + LMYQL KGVAFCHGHGILHRDLKPH+LLMDR+T MLKIADLGLARAFTVP+K
Sbjct: 121 IPPPTIKGLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPLK 180
Query: 210 KYTHEILTLWYRAR*SPFGSHPLLNGSGHVVRCLHL-C*TCNQASTLCLVIV-----SLQ 49
KYTHEILTLWYRA +L G+ H + + C A + + LQ
Sbjct: 181 KYTHEILTLWYRA-------PEVLLGATHYSMAVDMWSVACIFAELVTKTALFPGDSELQ 233
Query: 48 QLLHIFRLL 22
QLLHIFRLL
Sbjct: 234 QLLHIFRLL 242
>emb|CAC15504.1| B2-type cyclin dependent kinase [Lycopersicon esculentum]
Length = 315
Score = 322 bits (825), Expect = 4e-87
Identities = 169/239 (70%), Positives = 191/239 (79%), Gaps = 1/239 (0%)
Frame = -2
Query: 735 EKSGVVLSVKEAFEKLEKVGEGTYGNVYRAREKATGKIVALKKTRLHEDDEGVPPTTLRE 556
+ +G +S EAFEKLEKVGEGTYG VYRAR++ TGKIVALKKTRLHED+EGVPPTTLRE
Sbjct: 5 KNAGKSVSAMEAFEKLEKVGEGTYGKVYRARDRITGKIVALKKTRLHEDEEGVPPTTLRE 64
Query: 555 VSILRMLSRDPHVVRLMDVKQGQSKEGKTVLYLVFEYMDTDLKQFIRTFRQTGPNVPPPP 376
+S+LRMLSRDPH+VRLMDVKQGQ+KEGKTVLYLVFEYMDTD+K+FIRTFR G +P
Sbjct: 65 ISLLRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDVKKFIRTFRAKGETMPLKI 124
Query: 375 VTSLMYQLRKGVAFCHGHGILHRDLKPHHLLMDRETNMLKIADLGLARAFTVPIKKYTHE 196
V SLMYQL KGVAFCHGHG+LHRDLKPH+LLMDR+TN+LK+AD GL RA+T+PIKKYTHE
Sbjct: 125 VKSLMYQLCKGVAFCHGHGVLHRDLKPHNLLMDRKTNVLKLADFGLGRAYTLPIKKYTHE 184
Query: 195 ILTLWYRAR*SPFG-SHPLLNGSGHVVRCLHLC*TCNQASTLCLVIVSLQQLLHIFRLL 22
ILTLWYRA G +H V C+ NQA L LQQLLHIFRLL
Sbjct: 185 ILTLWYRAPEVLLGATHYSTAVDMWSVGCIFAELVTNQA--LFPGDSELQQLLHIFRLL 241
>ref|NP_177780.1| Cyclin-dependent kinase B2;1; protein id: At1g76540.1, supported by
cDNA: 1241., supported by cDNA: gi_14488070, supported
by cDNA: gi_14717829 [Arabidopsis thaliana]
gi|25287622|pir||D96793 hypothetical protein F14G6.14
[imported] - Arabidopsis thaliana
gi|12323989|gb|AAG51960.1|AC015450_21 putative cell
division control protein cdc2; 58653-56856 [Arabidopsis
thaliana] gi|13275210|emb|CAC34052.1| cyclin dependent
kinase [Arabidopsis thaliana]
gi|14717830|dbj|BAB62068.1| cyclin-dependent kinase B2
[Arabidopsis thaliana]
Length = 313
Score = 321 bits (822), Expect = 9e-87
Identities = 169/239 (70%), Positives = 191/239 (79%), Gaps = 1/239 (0%)
Frame = -2
Query: 738 MEKSGVVLSVKEAFEKLEKVGEGTYGNVYRAREKATGKIVALKKTRLHEDDEGVPPTTLR 559
M++ + +S +AFEKLEKVGEGTYG VYRAREKATGKIVALKKTRLHED+EGVP TTLR
Sbjct: 1 MDEGVIAVSAMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPSTTLR 60
Query: 558 EVSILRMLSRDPHVVRLMDVKQGQSKEGKTVLYLVFEYMDTDLKQFIRTFRQTGPNVPPP 379
E+SILRML+RDPHVVRLMDVKQG SKEGKTVLYLVFEYMDTD+K+FIR+FR TG N+P
Sbjct: 61 EISILRMLARDPHVVRLMDVKQGLSKEGKTVLYLVFEYMDTDVKKFIRSFRSTGKNIPTQ 120
Query: 378 PVTSLMYQLRKGVAFCHGHGILHRDLKPHHLLMDRETNMLKIADLGLARAFTVPIKKYTH 199
+ SLMYQL KG+AFCHGHGILHRDLKPH+LLMD +T LKIADLGLARAFT+P+KKYTH
Sbjct: 121 TIKSLMYQLCKGMAFCHGHGILHRDLKPHNLLMDPKTMRLKIADLGLARAFTLPMKKYTH 180
Query: 198 EILTLWYRAR*SPFG-SHPLLNGSGHVVRCLHLC*TCNQASTLCLVIVSLQQLLHIFRL 25
EILTLWYRA G +H V C+ NQA + LQQLLHIF+L
Sbjct: 181 EILTLWYRAPEVLLGATHYSTAVDMWSVGCIFAELVTNQA--IFQGDSELQQLLHIFKL 237
>gb|AAK63856.1|AF389283_1 At1g76540/F14G6_14 [Arabidopsis thaliana]
gi|23505877|gb|AAN28798.1| At1g76540/F14G6_14
[Arabidopsis thaliana]
Length = 313
Score = 321 bits (822), Expect = 9e-87
Identities = 169/239 (70%), Positives = 191/239 (79%), Gaps = 1/239 (0%)
Frame = -2
Query: 738 MEKSGVVLSVKEAFEKLEKVGEGTYGNVYRAREKATGKIVALKKTRLHEDDEGVPPTTLR 559
M++ + +S +AFEKLEKVGEGTYG VYRAREKATGKIVALKKTRLHED+EGVP TTLR
Sbjct: 1 MDEGVIAVSAMDAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPSTTLR 60
Query: 558 EVSILRMLSRDPHVVRLMDVKQGQSKEGKTVLYLVFEYMDTDLKQFIRTFRQTGPNVPPP 379
E+SILRML+RDPHVVRLMDVKQG SKEGKTVLYLVFEYMDTD+K+FIR+FR TG N+P
Sbjct: 61 EISILRMLARDPHVVRLMDVKQGLSKEGKTVLYLVFEYMDTDVKKFIRSFRSTGKNIPTQ 120
Query: 378 PVTSLMYQLRKGVAFCHGHGILHRDLKPHHLLMDRETNMLKIADLGLARAFTVPIKKYTH 199
+ SLMYQL KG+AFCHGHGILHRDLKPH+LLMD +T LKIADLGLARAFT+P+KKYTH
Sbjct: 121 TIKSLMYQLCKGMAFCHGHGILHRDLKPHNLLMDPKTMRLKIADLGLARAFTLPMKKYTH 180
Query: 198 EILTLWYRAR*SPFG-SHPLLNGSGHVVRCLHLC*TCNQASTLCLVIVSLQQLLHIFRL 25
EILTLWYRA G +H V C+ NQA + LQQLLHIF+L
Sbjct: 181 EILTLWYRAPEVLLGATHYSTAVDMWSVGCIFAELVTNQA--IFQGDSELQQLLHIFKL 237
>ref|NP_173517.1| Cyclin-dependent kinase B2;2; protein id: At1g20930.1, supported by
cDNA: 108339. [Arabidopsis thaliana]
gi|25287586|pir||B86342 probable cdc2 kinase [imported]
- Arabidopsis thaliana
gi|4836894|gb|AAD30597.1|AC007369_7 Putative cdc2 kinase
[Arabidopsis thaliana]
Length = 315
Score = 318 bits (815), Expect = 6e-86
Identities = 170/242 (70%), Positives = 191/242 (78%), Gaps = 3/242 (1%)
Frame = -2
Query: 738 MEKSGV--VLSVKEAFEKLEKVGEGTYGNVYRAREKATGKIVALKKTRLHEDDEGVPPTT 565
M+ +GV +S EAFEKLEKVGEGTYG VYRAREKATG IVALKKTRLHED+EGVPPTT
Sbjct: 1 MDNNGVKPAVSAMEAFEKLEKVGEGTYGKVYRAREKATGMIVALKKTRLHEDEEGVPPTT 60
Query: 564 LREVSILRMLSRDPHVVRLMDVKQGQSKEGKTVLYLVFEYMDTDLKQFIRTFRQTGPNVP 385
LRE+SILRML+RDPH+VRLMDVKQG +KEGKTVLYLVFEY+DTDLK+FIR+FRQ G N+P
Sbjct: 61 LREISILRMLARDPHIVRLMDVKQGINKEGKTVLYLVFEYVDTDLKKFIRSFRQAGQNIP 120
Query: 384 PPPVTSLMYQLRKGVAFCHGHGILHRDLKPHHLLMDRETNMLKIADLGLARAFTVPIKKY 205
V LMYQL KG+AFCHGHG+LHRDLKPH+LLMDR+T LKIADLGLARAFT+P+KKY
Sbjct: 121 QNTVKCLMYQLCKGMAFCHGHGVLHRDLKPHNLLMDRKTMTLKIADLGLARAFTLPMKKY 180
Query: 204 THEILTLWYRAR*SPFG-SHPLLNGSGHVVRCLHLC*TCNQASTLCLVIVSLQQLLHIFR 28
THEILTLWYRA G +H V C+ QA + LQQLL IFR
Sbjct: 181 THEILTLWYRAPEVLLGATHYSTGVDMWSVGCIFAELVTKQA--IFAGDSELQQLLRIFR 238
Query: 27 LL 22
LL
Sbjct: 239 LL 240
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 754,298,357
Number of Sequences: 1393205
Number of extensions: 18041972
Number of successful extensions: 87010
Number of sequences better than 10.0: 8930
Number of HSP's better than 10.0 without gapping: 72779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80998
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42296827742
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
