Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003113A_C01 KMC003113A_c01
(509 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177976.1| flavanone 3-hydroxylase, putative; protein id: ... 95 5e-19
ref|NP_173145.1| SRG1-like protein; protein id: At1g17020.1, sup... 94 9e-19
pir||G86305 SRG1 homolog [imported] - Arabidopsis thaliana gi|57... 92 5e-18
dbj|BAC42769.1| SRG1 like protein [Arabidopsis thaliana] 92 5e-18
ref|NP_173144.1| SRG1-like protein; protein id: At1g17010.1 [Ara... 92 5e-18
>ref|NP_177976.1| flavanone 3-hydroxylase, putative; protein id: At1g78550.1,
supported by cDNA: gi_13507544, supported by cDNA:
gi_15293284 [Arabidopsis thaliana]
gi|25285690|pir||A96814 hypothetical protein T30F21.12
[imported] - Arabidopsis thaliana
gi|4836877|gb|AAD30580.1|AC007260_11 Similar to SRG1
[Arabidopsis thaliana]
gi|13507545|gb|AAK28635.1|AF360338_1 putative flavanone
3-hydroxylase [Arabidopsis thaliana]
gi|15293285|gb|AAK93753.1| putative flavanone
3-hydroxylase [Arabidopsis thaliana]
Length = 356
Score = 94.7 bits (234), Expect = 5e-19
Identities = 43/87 (49%), Positives = 60/87 (68%)
Frame = -3
Query: 507 INVGDALEIMTNGIYRSIEHRATANSVKERISIATFQSPRLNAFIGPASSLVTSERPAMF 328
+NVG+ LEI+TNG YRSIEHRA NS KER+S+A F SP I PA SLV ++ +F
Sbjct: 269 VNVGEILEIITNGRYRSIEHRAVVNSEKERLSVAMFHSPGKETIIRPAKSLVDRQKQCLF 328
Query: 327 NKISVEEFYKGYFSDMLQGKSHINALR 247
+S +E++ +F+ L GKSH++ +R
Sbjct: 329 KSMSTQEYFDAFFTQKLNGKSHLDLMR 355
>ref|NP_173145.1| SRG1-like protein; protein id: At1g17020.1, supported by cDNA:
gi_15081818 [Arabidopsis thaliana] gi|629561|pir||S44261
SRG1 protein - Arabidopsis thaliana
gi|479047|emb|CAA55654.1| SRG1 [Arabidopsis thaliana]
gi|5734767|gb|AAD50032.1|AC007651_27 SRG1 Protein
[Arabidopsis thaliana] gi|15081819|gb|AAK82564.1|
F6I1.30/F6I1.30 [Arabidopsis thaliana]
gi|22655018|gb|AAM98100.1| At1g17020/F6I1.30
[Arabidopsis thaliana]
Length = 358
Score = 94.0 bits (232), Expect = 9e-19
Identities = 44/87 (50%), Positives = 63/87 (71%)
Frame = -3
Query: 507 INVGDALEIMTNGIYRSIEHRATANSVKERISIATFQSPRLNAFIGPASSLVTSERPAMF 328
+N+GD LEI+TNG YRSIEHR NS KER+SIATF + + +GPA SLV ++ A F
Sbjct: 271 VNIGDVLEIITNGTYRSIEHRGVVNSEKERLSIATFHNVGMYKEVGPAKSLVERQKVARF 330
Query: 327 NKISVEEFYKGYFSDMLQGKSHINALR 247
+++++E+ G FS L GK++++ALR
Sbjct: 331 KRLTMKEYNDGLFSRTLDGKAYLDALR 357
>pir||G86305 SRG1 homolog [imported] - Arabidopsis thaliana
gi|5734769|gb|AAD50034.1|AC007651_29 Very similar to
SRG1 [Arabidopsis thaliana]
Length = 346
Score = 91.7 bits (226), Expect = 5e-18
Identities = 44/87 (50%), Positives = 61/87 (69%)
Frame = -3
Query: 507 INVGDALEIMTNGIYRSIEHRATANSVKERISIATFQSPRLNAFIGPASSLVTSERPAMF 328
+NVGD LEI+TNG YRSIEHRA N KER+SIATF + ++ IGPA SLV + A F
Sbjct: 256 VNVGDVLEIITNGTYRSIEHRAMVNLEKERLSIATFHNTGMDKEIGPARSLVQRQEAAKF 315
Query: 327 NKISVEEFYKGYFSDMLQGKSHINALR 247
+ +++ G FS L+GK++++A+R
Sbjct: 316 RSLKTKDYLNGLFSRELKGKAYLDAMR 342
>dbj|BAC42769.1| SRG1 like protein [Arabidopsis thaliana]
Length = 361
Score = 91.7 bits (226), Expect = 5e-18
Identities = 44/87 (50%), Positives = 61/87 (69%)
Frame = -3
Query: 507 INVGDALEIMTNGIYRSIEHRATANSVKERISIATFQSPRLNAFIGPASSLVTSERPAMF 328
+NVGD LEI+TNG YRSIEHRA N KER+SIATF + ++ IGPA SLV + A F
Sbjct: 271 VNVGDVLEIITNGTYRSIEHRAMVNLEKERLSIATFHNTGMDKEIGPARSLVQRQEAAKF 330
Query: 327 NKISVEEFYKGYFSDMLQGKSHINALR 247
+ +++ G FS L+GK++++A+R
Sbjct: 331 RSLKTKDYLNGLFSRELKGKAYLDAMR 357
>ref|NP_173144.1| SRG1-like protein; protein id: At1g17010.1 [Arabidopsis thaliana]
Length = 361
Score = 91.7 bits (226), Expect = 5e-18
Identities = 44/87 (50%), Positives = 61/87 (69%)
Frame = -3
Query: 507 INVGDALEIMTNGIYRSIEHRATANSVKERISIATFQSPRLNAFIGPASSLVTSERPAMF 328
+NVGD LEI+TNG YRSIEHRA N KER+SIATF + ++ IGPA SLV + A F
Sbjct: 271 VNVGDVLEIITNGTYRSIEHRAMVNLEKERLSIATFHNTGMDKEIGPARSLVQRQEAAKF 330
Query: 327 NKISVEEFYKGYFSDMLQGKSHINALR 247
+ +++ G FS L+GK++++A+R
Sbjct: 331 RSLKTKDYLNGLFSRELKGKAYLDAMR 357
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,507,427
Number of Sequences: 1393205
Number of extensions: 8103275
Number of successful extensions: 16652
Number of sequences better than 10.0: 534
Number of HSP's better than 10.0 without gapping: 16271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16626
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
