Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003112A_C01 KMC003112A_c01
(594 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188498.1| uridylate kinase, putative; protein id: At3g186... 158 4e-38
dbj|BAC05612.1| putative uridylate kinase [Oryza sativa (japonic... 130 1e-29
ref|NP_441880.1| uridine monophosphate kinase [Synechocystis sp.... 109 3e-23
ref|ZP_00072557.1| hypothetical protein [Trichodesmium erythraeu... 107 9e-23
ref|NP_629760.1| uridylate kinase [Streptomyces coelicolor A3(2)... 102 4e-21
>ref|NP_188498.1| uridylate kinase, putative; protein id: At3g18680.1, supported by
cDNA: gi_15292788, supported by cDNA: gi_20258856
[Arabidopsis thaliana] gi|9293891|dbj|BAB01794.1|
contains similarity to uridylate kinase~gene_id:MVE11.4
[Arabidopsis thaliana] gi|15292789|gb|AAK92763.1|
putative uridylate kinase [Arabidopsis thaliana]
gi|20258857|gb|AAM14100.1| putative uridylate kinase
[Arabidopsis thaliana]
Length = 339
Score = 158 bits (400), Expect = 4e-38
Identities = 76/88 (86%), Positives = 83/88 (93%)
Frame = -3
Query: 592 KATNVDGVFDDDPKRNPEARLLDTLTYQEVITKDLSVMDLTAITLCQENNIPVVVFNLNK 413
KATNVDGVFDDDPKRNP ARLLD+LTYQEV +KDLSVMD+TAITLCQENNIPVVVFNL++
Sbjct: 251 KATNVDGVFDDDPKRNPNARLLDSLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLSE 310
Query: 412 PGNIEKAIKGEKVGTLIGGTWNSTVSRT 329
PGNI KAIKGE+VGTLIGGTWNS V+ T
Sbjct: 311 PGNIAKAIKGERVGTLIGGTWNSIVTTT 338
>dbj|BAC05612.1| putative uridylate kinase [Oryza sativa (japonica cultivar-group)]
Length = 295
Score = 130 bits (328), Expect = 1e-29
Identities = 64/80 (80%), Positives = 70/80 (87%)
Frame = -3
Query: 592 KATNVDGVFDDDPKRNPEARLLDTLTYQEVITKDLSVMDLTAITLCQENNIPVVVFNLNK 413
KATNVDGV+D DPKRNP ARLL+ ++Y EV T+DLSVMD+TAITLCQENNIPVVVFNL K
Sbjct: 195 KATNVDGVYDADPKRNPNARLLEAVSYHEVQTRDLSVMDMTAITLCQENNIPVVVFNLQK 254
Query: 412 PGNIEKAIKGEKVGTLIGGT 353
PGNI KAI GEKVGT IG T
Sbjct: 255 PGNIAKAIVGEKVGTFIGCT 274
>ref|NP_441880.1| uridine monophosphate kinase [Synechocystis sp. PCC 6803]
gi|2497492|sp|P74457|PYRH_SYNY3 Uridylate kinase (UK)
(Uridine monophosphate kinase) (UMP kinase)
gi|7447595|pir||S76429 hypothetical protein -
Synechocystis sp. (strain PCC 6803)
gi|1653646|dbj|BAA18558.1| uridine monophosphate kinase
[Synechocystis sp. PCC 6803]
Length = 260
Score = 109 bits (272), Expect = 3e-23
Identities = 50/78 (64%), Positives = 61/78 (78%)
Frame = -3
Query: 592 KATNVDGVFDDDPKRNPEARLLDTLTYQEVITKDLSVMDLTAITLCQENNIPVVVFNLNK 413
KAT VDGV+D DPK NP AR TLTY V+ +DL VMD TAI LC++NNIP+++F+L
Sbjct: 177 KATKVDGVYDSDPKTNPNARRFTTLTYSHVLAEDLKVMDSTAIALCKDNNIPIMIFDLGV 236
Query: 412 PGNIEKAIKGEKVGTLIG 359
PGNI +AIKGE VGTL+G
Sbjct: 237 PGNIVRAIKGEAVGTLVG 254
>ref|ZP_00072557.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 244
Score = 107 bits (268), Expect = 9e-23
Identities = 49/79 (62%), Positives = 64/79 (80%)
Frame = -3
Query: 592 KATNVDGVFDDDPKRNPEARLLDTLTYQEVITKDLSVMDLTAITLCQENNIPVVVFNLNK 413
KAT VDGV+D DP +N EA+ ++L+Y EV+T DL VMD TAI LC+ENNIP++VFNL+
Sbjct: 159 KATKVDGVYDSDPHKNQEAKRYESLSYGEVLTLDLRVMDSTAIALCKENNIPIIVFNLSV 218
Query: 412 PGNIEKAIKGEKVGTLIGG 356
GNI KA+ GEK+GT++GG
Sbjct: 219 SGNICKAVMGEKIGTIVGG 237
>ref|NP_629760.1| uridylate kinase [Streptomyces coelicolor A3(2)]
gi|22653951|sp|O69913|PYRH_STRCO Uridylate kinase (UK)
(Uridine monophosphate kinase) (UMP kinase)
gi|7481845|pir||T34811 uridylate kinase - Streptomyces
coelicolor gi|3192019|emb|CAA19418.1| uridylate kinase
[Streptomyces coelicolor A3(2)]
Length = 253
Score = 102 bits (254), Expect = 4e-21
Identities = 46/74 (62%), Positives = 59/74 (79%)
Frame = -3
Query: 580 VDGVFDDDPKRNPEARLLDTLTYQEVITKDLSVMDLTAITLCQENNIPVVVFNLNKPGNI 401
VDGV+D DPK NP+A D L Y EVIT+DL V D TA+TLC++N++P+VVF L K GNI
Sbjct: 174 VDGVYDSDPKTNPDAVKFDALGYGEVITRDLKVADATAVTLCRDNSLPIVVFELLKEGNI 233
Query: 400 EKAIKGEKVGTLIG 359
+A+KGEK+GTL+G
Sbjct: 234 ARAVKGEKIGTLVG 247
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,177,374
Number of Sequences: 1393205
Number of extensions: 9390812
Number of successful extensions: 20813
Number of sequences better than 10.0: 318
Number of HSP's better than 10.0 without gapping: 20358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20770
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
