Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003111A_C01 KMC003111A_c01
(659 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61017.1| unknown [Arabidopsis thaliana] 105 4e-25
ref|NP_030235.1| expressed protein; protein id: At2g36840.1, sup... 105 4e-25
gb|AAK74028.1| At2g39570/F12L6.23 [Arabidopsis thaliana] gi|2330... 100 2e-20
ref|NP_565908.1| expressed protein; protein id: At2g39570.1, sup... 100 2e-20
ref|NP_705867.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.23
>gb|AAM61017.1| unknown [Arabidopsis thaliana]
Length = 410
Score = 105 bits (261), Expect(2) = 4e-25
Identities = 48/69 (69%), Positives = 58/69 (83%)
Frame = -1
Query: 659 DTELLVANPVELSGKGRPLVIYDITLALKMLHICIFSAEIGRHVIGDREWEVYRILLDEG 480
DTELLV NPVELSGKGRP V +DI LALK + CIFSAEIGRHV GDREWEVY++L++E
Sbjct: 329 DTELLVTNPVELSGKGRPQVFHDIALALKKIDTCIFSAEIGRHVTGDREWEVYKVLINEE 388
Query: 479 EGLSVPRNQ 453
+ L +PR++
Sbjct: 389 DSLPIPRSK 397
Score = 31.6 bits (70), Expect(2) = 4e-25
Identities = 11/17 (64%), Positives = 14/17 (81%)
Frame = -2
Query: 463 PGTRLEERVWKMLMGWE 413
P +++EE VWK LMGWE
Sbjct: 394 PRSKIEEEVWKTLMGWE 410
>ref|NP_030235.1| expressed protein; protein id: At2g36840.1, supported by cDNA:
108427., supported by cDNA: gi_20260621 [Arabidopsis
thaliana] gi|25341898|pir||D84785 hypothetical protein
At2g36840 [imported] - Arabidopsis thaliana
gi|4883601|gb|AAD31570.1| expressed protein [Arabidopsis
thaliana] gi|20260622|gb|AAM13209.1| unknown protein
[Arabidopsis thaliana] gi|23197994|gb|AAN15524.1|
unknown protein [Arabidopsis thaliana]
Length = 410
Score = 105 bits (261), Expect(2) = 4e-25
Identities = 48/69 (69%), Positives = 58/69 (83%)
Frame = -1
Query: 659 DTELLVANPVELSGKGRPLVIYDITLALKMLHICIFSAEIGRHVIGDREWEVYRILLDEG 480
DTELLV NPVELSGKGRP V +DI LALK + CIFSAEIGRHV GDREWEVY++L++E
Sbjct: 329 DTELLVTNPVELSGKGRPQVFHDIALALKKIDTCIFSAEIGRHVTGDREWEVYKVLINEE 388
Query: 479 EGLSVPRNQ 453
+ L +PR++
Sbjct: 389 DSLPIPRSK 397
Score = 31.6 bits (70), Expect(2) = 4e-25
Identities = 11/17 (64%), Positives = 14/17 (81%)
Frame = -2
Query: 463 PGTRLEERVWKMLMGWE 413
P +++EE VWK LMGWE
Sbjct: 394 PRSKIEEEVWKTLMGWE 410
>gb|AAK74028.1| At2g39570/F12L6.23 [Arabidopsis thaliana]
gi|23308377|gb|AAN18158.1| At2g39570/F12L6.23
[Arabidopsis thaliana]
Length = 411
Score = 100 bits (248), Expect = 2e-20
Identities = 49/59 (83%), Positives = 51/59 (86%)
Frame = -1
Query: 659 DTELLVANPVELSGKGRPLVIYDITLALKMLHICIFSAEIGRHVIGDREWEVYRILLDE 483
DTELLVANPVELSGKGRP V YD+TLALK L ICIFSAEIGRH DR+WEVYR LLDE
Sbjct: 327 DTELLVANPVELSGKGRPRVFYDVTLALKSLGICIFSAEIGRHSTLDRQWEVYRFLLDE 385
>ref|NP_565908.1| expressed protein; protein id: At2g39570.1, supported by cDNA:
gi_15010737 [Arabidopsis thaliana]
gi|7485413|pir||T00567 hypothetical protein At2g39570
[imported] - Arabidopsis thaliana
gi|3355486|gb|AAC27848.1| expressed protein [Arabidopsis
thaliana]
Length = 411
Score = 100 bits (248), Expect = 2e-20
Identities = 49/59 (83%), Positives = 51/59 (86%)
Frame = -1
Query: 659 DTELLVANPVELSGKGRPLVIYDITLALKMLHICIFSAEIGRHVIGDREWEVYRILLDE 483
DTELLVANPVELSGKGRP V YD+TLALK L ICIFSAEIGRH DR+WEVYR LLDE
Sbjct: 327 DTELLVANPVELSGKGRPRVFYDVTLALKSLGICIFSAEIGRHSTLDRQWEVYRFLLDE 385
>ref|NP_705867.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|8052291|emb|CAB92304.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 729
Score = 37.0 bits (84), Expect = 0.23
Identities = 19/64 (29%), Positives = 36/64 (55%)
Frame = +1
Query: 22 LYFSIHIVQCRDSFTHLNSLKVLLMLFIFKESASRRTRKGLNIFTTLQYLISEKYTFPPF 201
+YF+++I+ + ++ L+S + L+LFIF + + + FT+LQ + +FP F
Sbjct: 615 IYFNMYIINKQTNYISLHS-SIYLILFIFVKHTNTSVYTMFSYFTSLQNYLETTNSFPLF 673
Query: 202 SSTC 213
S C
Sbjct: 674 DSYC 677
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,927,091
Number of Sequences: 1393205
Number of extensions: 12551952
Number of successful extensions: 29185
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 28240
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29165
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
