Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003109A_C01 KMC003109A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_186783.1| transport protein SEC13, putative; protein id: ... 261 3e-69
gb|AAM65185.1| transport protein SEC13, putative [Arabidopsis th... 261 3e-69
dbj|BAB83081.1| Sec13p [Oryza sativa] 261 5e-69
gb|AAM65095.1| putative protein transport protein SEC13 [Arabido... 258 3e-68
ref|NP_180566.1| G-protein beta family; protein id: At2g30050.1,... 258 3e-68
>ref|NP_186783.1| transport protein SEC13, putative; protein id: At3g01340.1,
supported by cDNA: 37331., supported by cDNA:
gi_13877998, supported by cDNA: gi_17104728 [Arabidopsis
thaliana] gi|6094550|gb|AAF03492.1|AC010676_2 putative
protein transport protein SEC13 [Arabidopsis thaliana]
gi|13877999|gb|AAK44077.1|AF370262_1 putative transport
protein SEC13 [Arabidopsis thaliana]
gi|17104729|gb|AAL34253.1| putative transport protein
SEC13 [Arabidopsis thaliana]
Length = 302
Score = 261 bits (668), Expect = 3e-69
Identities = 120/151 (79%), Positives = 136/151 (89%), Gaps = 1/151 (0%)
Frame = +3
Query: 102 MPAQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIMGVSNTA-SQHLATLAGHQGPVG 278
MP QK+ETGH DT+HDV MDYYGKR+ATASSD TIKI GVSN+ SQHLATL GH+GPV
Sbjct: 1 MPPQKIETGHSDTIHDVVMDYYGKRVATASSDCTIKITGVSNSGGSQHLATLTGHRGPVW 60
Query: 279 QVAWAHPKFGSMIASCSYDGRVIIGKEGNQNEWIQAHVFDDHKSSVNSVVWAPHELGLCL 458
QVAWAHPKFGS++ASCSYDG++I+ KEGNQN+W QAHVF DHK SVNS+ WAPHELGL L
Sbjct: 61 QVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSL 120
Query: 459 ACGSSDGNISVFTARADGGWDTSRIDQAHPV 551
ACG+SDGNISVF+ARADGGWDT++IDQAHPV
Sbjct: 121 ACGASDGNISVFSARADGGWDTTKIDQAHPV 151
Score = 54.3 bits (129), Expect = 1e-06
Identities = 47/144 (32%), Positives = 65/144 (44%), Gaps = 5/144 (3%)
Frame = +3
Query: 105 PAQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIMGVSNTASQH--LATLAGHQGPVG 278
P V +G D V+ +LA+ D T+K+ SN + + L H V
Sbjct: 164 PGALVSSGMIDPVY---------KLASGGCDSTVKVWKFSNGSWKMDCFPALNKHTDWVR 214
Query: 279 QVAWAHPKFG---SMIASCSYDGRVIIGKEGNQNEWIQAHVFDDHKSSVNSVVWAPHELG 449
VAWA P G S IAS S DG+VII G + E + V D K+ V V W+ G
Sbjct: 215 DVAWA-PNLGLPKSTIASGSEDGKVIIWTIGKEGEQWEGTVLKDFKTPVWRVSWS--LTG 271
Query: 450 LCLACGSSDGNISVFTARADGGWD 521
LA + N++V+ DG W+
Sbjct: 272 NLLAVSDGNNNVTVWKESVDGEWE 295
>gb|AAM65185.1| transport protein SEC13, putative [Arabidopsis thaliana]
Length = 301
Score = 261 bits (668), Expect = 3e-69
Identities = 120/151 (79%), Positives = 136/151 (89%), Gaps = 1/151 (0%)
Frame = +3
Query: 102 MPAQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIMGVSNTA-SQHLATLAGHQGPVG 278
MP QK+ETGH DT+HDV MDYYGKR+ATASSD TIKI GVSN+ SQHLATL GH+GPV
Sbjct: 1 MPPQKIETGHSDTIHDVVMDYYGKRVATASSDCTIKITGVSNSGGSQHLATLTGHRGPVW 60
Query: 279 QVAWAHPKFGSMIASCSYDGRVIIGKEGNQNEWIQAHVFDDHKSSVNSVVWAPHELGLCL 458
QVAWAHPKFGS++ASCSYDG++I+ KEGNQN+W QAHVF DHK SVNS+ WAPHELGL L
Sbjct: 61 QVAWAHPKFGSLLASCSYDGQIILWKEGNQNQWTQAHVFTDHKVSVNSIAWAPHELGLSL 120
Query: 459 ACGSSDGNISVFTARADGGWDTSRIDQAHPV 551
ACG+SDGNISVF+ARADGGWDT++IDQAHPV
Sbjct: 121 ACGASDGNISVFSARADGGWDTTKIDQAHPV 151
Score = 50.8 bits (120), Expect = 1e-05
Identities = 46/144 (31%), Positives = 64/144 (43%), Gaps = 5/144 (3%)
Frame = +3
Query: 105 PAQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIMGVSNTASQH--LATLAGHQGPVG 278
P V +G D V+ +LA+ D T+K+ SN + + L H V
Sbjct: 164 PGALVSSGMIDPVY---------KLASGGCDSTVKVWKFSNGSWKMDCFPALNKHTDWVR 214
Query: 279 QVAWAHPKFG---SMIASCSYDGRVIIGKEGNQNEWIQAHVFDDHKSSVNSVVWAPHELG 449
VAWA P G S IAS S DG+VII G +W + V D K+ V V W+
Sbjct: 215 DVAWA-PNLGLPKSTIASGSEDGKVIIWTIGKGEQW-EGTVLKDFKTPVWRVSWS--LTA 270
Query: 450 LCLACGSSDGNISVFTARADGGWD 521
LA + N++V+ DG W+
Sbjct: 271 NLLAVSDGNNNVTVWKESVDGEWE 294
>dbj|BAB83081.1| Sec13p [Oryza sativa]
Length = 305
Score = 261 bits (666), Expect = 5e-69
Identities = 120/151 (79%), Positives = 137/151 (90%), Gaps = 1/151 (0%)
Frame = +3
Query: 102 MPAQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIMGVSNTASQHLATLAGHQGPVGQ 281
MP K+ETGHQD VHD+AMDYYGKR+ATASSD+TIKI+GVS + Q LATL+GHQGPV Q
Sbjct: 1 MPPHKIETGHQDVVHDIAMDYYGKRIATASSDNTIKIIGVSGNSHQQLATLSGHQGPVWQ 60
Query: 282 VAWAHPKFGSMIASCSYDGRVIIGKEGNQ-NEWIQAHVFDDHKSSVNSVVWAPHELGLCL 458
VAWAHPK+GS++ASCSYDGRVII KEG++ +EW QAH F +HKSSVNS+ WAPHELGLCL
Sbjct: 61 VAWAHPKYGSLLASCSYDGRVIIWKEGSKPDEWAQAHTFIEHKSSVNSIAWAPHELGLCL 120
Query: 459 ACGSSDGNISVFTARADGGWDTSRIDQAHPV 551
ACGSSDGNISVFTAR+DGGWDT+RIDQAHPV
Sbjct: 121 ACGSSDGNISVFTARSDGGWDTTRIDQAHPV 151
>gb|AAM65095.1| putative protein transport protein SEC13 [Arabidopsis thaliana]
Length = 302
Score = 258 bits (659), Expect = 3e-68
Identities = 120/151 (79%), Positives = 134/151 (88%), Gaps = 1/151 (0%)
Frame = +3
Query: 102 MPAQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIMGVSNTA-SQHLATLAGHQGPVG 278
MP QK+ETGH+D VHDV MDYYGKR+ATASSD TIKI GVSN SQ LATL GH+GPV
Sbjct: 1 MPGQKIETGHEDIVHDVQMDYYGKRIATASSDCTIKITGVSNNGGSQQLATLTGHRGPVW 60
Query: 279 QVAWAHPKFGSMIASCSYDGRVIIGKEGNQNEWIQAHVFDDHKSSVNSVVWAPHELGLCL 458
+VAWAHPK+GS++ASCSYDG+VI+ KEGNQN+W Q HVF DHKSSVNS+ WAPH++GL L
Sbjct: 61 EVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSL 120
Query: 459 ACGSSDGNISVFTARADGGWDTSRIDQAHPV 551
ACGSSDGNISVFTARADGGWDTSRIDQAHPV
Sbjct: 121 ACGSSDGNISVFTARADGGWDTSRIDQAHPV 151
Score = 49.7 bits (117), Expect = 2e-05
Identities = 44/144 (30%), Positives = 65/144 (44%), Gaps = 5/144 (3%)
Frame = +3
Query: 105 PAQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIMGVSNTASQH--LATLAGHQGPVG 278
P V +G D V+ +LA+ D+T+K+ ++N + + L H V
Sbjct: 164 PGALVSSGLLDPVY---------KLASGGCDNTVKVWKLANGSWKMDCFPALQKHTDWVR 214
Query: 279 QVAWAHPKFG---SMIASCSYDGRVIIGKEGNQNEWIQAHVFDDHKSSVNSVVWAPHELG 449
VAWA P G S IAS S DG+VII G + E + V D + V V + G
Sbjct: 215 DVAWA-PNLGLPKSTIASGSQDGKVIIWTVGKEGEQWEGKVLKDFMTPVWRV--SSSLTG 271
Query: 450 LCLACGSSDGNISVFTARADGGWD 521
LA + N++V+ DG W+
Sbjct: 272 NLLAVSDGNNNVTVWKEAVDGEWE 295
>ref|NP_180566.1| G-protein beta family; protein id: At2g30050.1, supported by cDNA:
36577., supported by cDNA: gi_15724343 [Arabidopsis
thaliana] gi|7446122|pir||T02480 sec13-related protein
At2g30050 - Arabidopsis thaliana
gi|3150415|gb|AAC16967.1| putative protein transport
protein SEC13 [Arabidopsis thaliana]
gi|15724344|gb|AAL06565.1|AF412112_1 At2g30050/F23F1.3
[Arabidopsis thaliana] gi|20197232|gb|AAM14986.1|
putative protein transport protein SEC13 [Arabidopsis
thaliana] gi|21700867|gb|AAM70557.1| At2g30050/F23F1.3
[Arabidopsis thaliana]
Length = 302
Score = 258 bits (659), Expect = 3e-68
Identities = 120/151 (79%), Positives = 134/151 (88%), Gaps = 1/151 (0%)
Frame = +3
Query: 102 MPAQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIMGVSNTA-SQHLATLAGHQGPVG 278
MP QK+ETGH+D VHDV MDYYGKR+ATASSD TIKI GVSN SQ LATL GH+GPV
Sbjct: 1 MPGQKIETGHEDIVHDVQMDYYGKRIATASSDCTIKITGVSNNGGSQQLATLTGHRGPVW 60
Query: 279 QVAWAHPKFGSMIASCSYDGRVIIGKEGNQNEWIQAHVFDDHKSSVNSVVWAPHELGLCL 458
+VAWAHPK+GS++ASCSYDG+VI+ KEGNQN+W Q HVF DHKSSVNS+ WAPH++GL L
Sbjct: 61 EVAWAHPKYGSILASCSYDGQVILWKEGNQNQWTQDHVFTDHKSSVNSIAWAPHDIGLSL 120
Query: 459 ACGSSDGNISVFTARADGGWDTSRIDQAHPV 551
ACGSSDGNISVFTARADGGWDTSRIDQAHPV
Sbjct: 121 ACGSSDGNISVFTARADGGWDTSRIDQAHPV 151
Score = 53.9 bits (128), Expect = 1e-06
Identities = 45/144 (31%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Frame = +3
Query: 105 PAQKVETGHQDTVHDVAMDYYGKRLATASSDHTIKIMGVSNTASQH--LATLAGHQGPVG 278
P V +G D V+ +LA+ D+T+K+ ++N + + L H V
Sbjct: 164 PGALVSSGLLDPVY---------KLASGGCDNTVKVWKLANGSWKMDCFPALQKHTDWVR 214
Query: 279 QVAWAHPKFG---SMIASCSYDGRVIIGKEGNQNEWIQAHVFDDHKSSVNSVVWAPHELG 449
VAWA P G S IAS S DG+VII G + E + V D + V V W+ G
Sbjct: 215 DVAWA-PNLGLPKSTIASGSQDGKVIIWTVGKEGEQWEGKVLKDFMTPVWRVSWS--LTG 271
Query: 450 LCLACGSSDGNISVFTARADGGWD 521
LA + N++V+ DG W+
Sbjct: 272 NLLAVSDGNNNVTVWKEAVDGEWE 295
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 558,124,581
Number of Sequences: 1393205
Number of extensions: 13279319
Number of successful extensions: 36091
Number of sequences better than 10.0: 863
Number of HSP's better than 10.0 without gapping: 33269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35526
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
