Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003107A_C01 KMC003107A_c01
(629 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566752.1| rubisco expression protein, putative; protein i... 58 9e-08
gb|AAM62603.1| rubisco expression protein, putative [Arabidopsis... 58 9e-08
dbj|BAB02004.1| gene_id:MOB24.10~unknown protein [Arabidopsis th... 58 9e-08
gb|EAA15462.1| putative pre-mRNA splicing factor [Plasmodium yoe... 33 4.0
>ref|NP_566752.1| rubisco expression protein, putative; protein id: At3g24530.1,
supported by cDNA: 148454., supported by cDNA:
gi_13507552, supported by cDNA: gi_15293290 [Arabidopsis
thaliana] gi|13507553|gb|AAK28639.1|AF360342_1 putative
rubisco expression protein [Arabidopsis thaliana]
gi|15293291|gb|AAK93756.1| putative rubisco expression
protein [Arabidopsis thaliana]
Length = 481
Score = 58.2 bits (139), Expect = 9e-08
Identities = 27/34 (79%), Positives = 30/34 (87%)
Frame = -1
Query: 629 RENLDLRLSFECIDTEELLTITLEDLEAGLHLLS 528
RENLDLRLSFEC+DTEE+ TI LEDLEAGL + S
Sbjct: 447 RENLDLRLSFECVDTEEICTIKLEDLEAGLRVFS 480
>gb|AAM62603.1| rubisco expression protein, putative [Arabidopsis thaliana]
Length = 481
Score = 58.2 bits (139), Expect = 9e-08
Identities = 27/34 (79%), Positives = 30/34 (87%)
Frame = -1
Query: 629 RENLDLRLSFECIDTEELLTITLEDLEAGLHLLS 528
RENLDLRLSFEC+DTEE+ TI LEDLEAGL + S
Sbjct: 447 RENLDLRLSFECVDTEEICTIKLEDLEAGLRVFS 480
>dbj|BAB02004.1| gene_id:MOB24.10~unknown protein [Arabidopsis thaliana]
Length = 468
Score = 58.2 bits (139), Expect = 9e-08
Identities = 27/34 (79%), Positives = 30/34 (87%)
Frame = -1
Query: 629 RENLDLRLSFECIDTEELLTITLEDLEAGLHLLS 528
RENLDLRLSFEC+DTEE+ TI LEDLEAGL + S
Sbjct: 434 RENLDLRLSFECVDTEEICTIKLEDLEAGLRVFS 467
>gb|EAA15462.1| putative pre-mRNA splicing factor [Plasmodium yoelii yoelii]
Length = 1172
Score = 32.7 bits (73), Expect = 4.0
Identities = 21/53 (39%), Positives = 30/53 (55%), Gaps = 2/53 (3%)
Frame = +3
Query: 162 KNKGKV-LHQWSQWSLYNIINY-REKRKSFPKNDPPSMANLFMTSSSMSNCKL 314
KN V L +W S+ N++NY R+K+K PKN P+ +L M + SN L
Sbjct: 129 KNLANVTLEEWE--SIPNVLNYSRQKQKKMPKNYLPAPDSLIMNKLNESNSHL 179
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,726,632
Number of Sequences: 1393205
Number of extensions: 10995261
Number of successful extensions: 23639
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 22717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23629
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25870486187
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
