Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003106A_C06 KMC003106A_c06
(615 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63845.1| putative signal sequence receptor, alpha subunit ... 127 2e-28
pir||H84597 hypothetical protein At2g21160 [imported] - Arabidop... 125 4e-28
ref|NP_565498.1| putative signal sequence receptor, alpha subuni... 125 4e-28
gb|AAA21820.1| alpha-subunit; putative 125 4e-28
ref|NP_179250.1| putative TRAP protein; protein id: At2g16595.1 ... 105 6e-22
>gb|AAM63845.1| putative signal sequence receptor, alpha subunit (SSR-alpha)
[Arabidopsis thaliana]
Length = 258
Score = 127 bits (318), Expect = 2e-28
Identities = 61/98 (62%), Positives = 76/98 (77%)
Frame = -1
Query: 615 VYEIEDDPYPTTLPNGTIEVVEAGGFLSIESVFLVTLGAALLVLLGLWIHGQIQNLSKKT 436
+Y++E PY + NGTIEVVE+GG LS ESVFL+TLG LL+LLGLW + Q+Q L+KKT
Sbjct: 160 IYDVEGKPYQSVFYNGTIEVVESGGLLSGESVFLLTLGIGLLLLLGLWAYSQVQRLTKKT 219
Query: 435 KRAPKVEVGTRSIDASTDEWLQGTAYAQSLSSKSKKKK 322
K+ KVEVGTRS DAS DEWL+GT A++ S K+K KK
Sbjct: 220 KKVSKVEVGTRSTDASLDEWLEGTTLAKTSSGKTKNKK 257
>pir||H84597 hypothetical protein At2g21160 [imported] - Arabidopsis thaliana
Length = 257
Score = 125 bits (314), Expect = 4e-28
Identities = 60/98 (61%), Positives = 76/98 (77%)
Frame = -1
Query: 615 VYEIEDDPYPTTLPNGTIEVVEAGGFLSIESVFLVTLGAALLVLLGLWIHGQIQNLSKKT 436
+Y++E PY + NGTIEVVE+GG LS ESVFL+TLG LL+LLGLW + Q+Q L+KKT
Sbjct: 159 IYDVEGKPYQSVFYNGTIEVVESGGLLSGESVFLLTLGIGLLLLLGLWAYSQVQRLTKKT 218
Query: 435 KRAPKVEVGTRSIDASTDEWLQGTAYAQSLSSKSKKKK 322
K+ KVEVGTRS +AS DEWL+GT A++ S K+K KK
Sbjct: 219 KKVSKVEVGTRSTEASLDEWLEGTTLAKTSSGKTKNKK 256
>ref|NP_565498.1| putative signal sequence receptor, alpha subunit (SSR-alpha);
protein id: At2g21160.1, supported by cDNA: 27787.,
supported by cDNA: gi_15215645 [Arabidopsis thaliana]
gi|26007030|sp|P45434|SSRA_ARATH Translocon-associated
protein, alpha subunit precursor (TRAP-alpha) (Signal
sequence receptor alpha subunit) (SSR-alpha)
gi|15215646|gb|AAK91368.1| At2g21160/F26H11.8
[Arabidopsis thaliana] gi|20197721|gb|AAD29800.2|
putative signal sequence receptor, alpha subunit
(SSR-alpha) [Arabidopsis thaliana]
Length = 258
Score = 125 bits (314), Expect = 4e-28
Identities = 60/98 (61%), Positives = 76/98 (77%)
Frame = -1
Query: 615 VYEIEDDPYPTTLPNGTIEVVEAGGFLSIESVFLVTLGAALLVLLGLWIHGQIQNLSKKT 436
+Y++E PY + NGTIEVVE+GG LS ESVFL+TLG LL+LLGLW + Q+Q L+KKT
Sbjct: 160 IYDVEGKPYQSVFYNGTIEVVESGGLLSGESVFLLTLGIGLLLLLGLWAYSQVQRLTKKT 219
Query: 435 KRAPKVEVGTRSIDASTDEWLQGTAYAQSLSSKSKKKK 322
K+ KVEVGTRS +AS DEWL+GT A++ S K+K KK
Sbjct: 220 KKVSKVEVGTRSTEASLDEWLEGTTLAKTSSGKTKNKK 257
>gb|AAA21820.1| alpha-subunit; putative
Length = 253
Score = 125 bits (314), Expect = 4e-28
Identities = 60/98 (61%), Positives = 76/98 (77%)
Frame = -1
Query: 615 VYEIEDDPYPTTLPNGTIEVVEAGGFLSIESVFLVTLGAALLVLLGLWIHGQIQNLSKKT 436
+Y++E PY + NGTIEVVE+GG LS ESVFL+TLG LL+LLGLW + Q+Q L+KKT
Sbjct: 155 IYDVEGKPYQSVFYNGTIEVVESGGLLSGESVFLLTLGIGLLLLLGLWAYSQVQRLTKKT 214
Query: 435 KRAPKVEVGTRSIDASTDEWLQGTAYAQSLSSKSKKKK 322
K+ KVEVGTRS +AS DEWL+GT A++ S K+K KK
Sbjct: 215 KKVSKVEVGTRSTEASLDEWLEGTTLAKTSSGKTKNKK 252
>ref|NP_179250.1| putative TRAP protein; protein id: At2g16595.1 [Arabidopsis
thaliana] gi|20197462|gb|AAM15085.1| putative TRAP
protein [Arabidopsis thaliana]
gi|20198182|gb|AAM15448.1| putative TRAP protein
[Arabidopsis thaliana]
Length = 140
Score = 105 bits (261), Expect = 6e-22
Identities = 55/98 (56%), Positives = 71/98 (72%)
Frame = -1
Query: 615 VYEIEDDPYPTTLPNGTIEVVEAGGFLSIESVFLVTLGAALLVLLGLWIHGQIQNLSKKT 436
+YEI+ PY + NGTIEVVE G +ESVFL L ++ L ++I +++++KKT
Sbjct: 44 IYEIDGKPYQSIFYNGTIEVVEDGPLFRMESVFLSGLLIFVIAFLAIYIQNVLKHMTKKT 103
Query: 435 KRAPKVEVGTRSIDASTDEWLQGTAYAQSLSSKSKKKK 322
KRAPKVEVGT + DAS DEWL+GT+Y QS SSKSKKKK
Sbjct: 104 KRAPKVEVGTATKDASHDEWLEGTSYTQS-SSKSKKKK 140
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 519,161,483
Number of Sequences: 1393205
Number of extensions: 10794793
Number of successful extensions: 34066
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 32032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34037
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
