Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003097A_C01 KMC003097A_c01
(527 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195805.1| protein kinase ATN1-like protein; protein id: A... 45 7e-04
gb|AAM98213.1| protein kinase ATN1-like protein [Arabidopsis tha... 45 7e-04
emb|CAA21925.1| hypothetical protein [Candida albicans] 33 2.1
ref|XP_206143.1| hypothetical protein XP_206143 [Mus musculus] g... 33 2.1
gb|AAF08165.1| NADH dehydrogenase subunit F [Rhododendron mucron... 32 4.6
>ref|NP_195805.1| protein kinase ATN1-like protein; protein id: At5g01850.1
[Arabidopsis thaliana] gi|11259780|pir||T48206 protein
kinase ATN1-like protein - Arabidopsis thaliana
gi|7329658|emb|CAB82755.1| protein kinase ATN1-like
protein [Arabidopsis thaliana]
Length = 356
Score = 44.7 bits (104), Expect = 7e-04
Identities = 24/48 (50%), Positives = 30/48 (62%)
Frame = -1
Query: 503 PEPENEPEVATTSNGTITSNGTITEFSARNRGKFAFLRHLFSSKRAKN 360
P P+ PE AT T+ ITEFS R +GKFAF+R LF++KR N
Sbjct: 312 PPPQPLPETATNR----TNGRAITEFSIRPKGKFAFIRQLFAAKRNIN 355
>gb|AAM98213.1| protein kinase ATN1-like protein [Arabidopsis thaliana]
gi|25084113|gb|AAN72179.1| protein kinase ATN1-like
protein [Arabidopsis thaliana]
Length = 333
Score = 44.7 bits (104), Expect = 7e-04
Identities = 24/48 (50%), Positives = 30/48 (62%)
Frame = -1
Query: 503 PEPENEPEVATTSNGTITSNGTITEFSARNRGKFAFLRHLFSSKRAKN 360
P P+ PE AT T+ ITEFS R +GKFAF+R LF++KR N
Sbjct: 289 PPPQPLPETATNR----TNGRAITEFSIRPKGKFAFIRQLFAAKRNIN 332
>emb|CAA21925.1| hypothetical protein [Candida albicans]
Length = 209
Score = 33.1 bits (74), Expect = 2.1
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = +2
Query: 296 QGQIFSSTTKGKFKKSSTYSVSFWP 370
QG++FSS T+ F KS YS FWP
Sbjct: 151 QGEVFSSATRIAFFKSLKYSYCFWP 175
>ref|XP_206143.1| hypothetical protein XP_206143 [Mus musculus]
gi|25072189|ref|XP_196900.1| hypothetical protein
XP_196900 [Mus musculus]
Length = 152
Score = 33.1 bits (74), Expect = 2.1
Identities = 22/61 (36%), Positives = 31/61 (50%)
Frame = +3
Query: 186 FHKVYKQHSILLLNMLHPSSCHLRWLLINALKFIYHSKGKSFHLQQKVSLKNLALTLLVF 365
FH + +HS LL H C L LL+ +L Y +K S H +Q+ S + +LVF
Sbjct: 16 FHPTHHRHSTSLLAWSH---CSLIPLLLFSLFSDYKAKNISNHNEQESSQRKCPFPILVF 72
Query: 366 G 368
G
Sbjct: 73 G 73
>gb|AAF08165.1| NADH dehydrogenase subunit F [Rhododendron mucronulatum]
Length = 702
Score = 32.0 bits (71), Expect = 4.6
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 94 HSQN-RKMTKPMYPFTKRSSRKCKQSFVYPYPFIKSINNILFFC*TCYILLVV 249
H +N RKMT+P F S++K F+YPY +NI+ FC IL +
Sbjct: 507 HDENVRKMTRPFITFNHFSNKKI---FLYPY----ESDNIILFCLLLLILFAL 552
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 420,695,263
Number of Sequences: 1393205
Number of extensions: 8419875
Number of successful extensions: 22674
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 21572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22631
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
