Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003096A_C01 KMC003096A_c01
(439 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK15446.1|AC037426_8 hypothetical protein [Oryza sativa (jap... 48 3e-05
ref|NP_701446.1| hypothetical protein [Plasmodium falciparum 3D7... 31 3.1
ref|NP_635565.1| indolepyruvate ferredoxin oxidoreductase chain ... 30 5.2
ref|NP_640545.1| indolepyruvate ferredoxin oxidoreductase chain ... 30 5.2
ref|NP_700684.1| hypothetical protein [Plasmodium falciparum 3D7... 30 6.8
>gb|AAK15446.1|AC037426_8 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 237
Score = 47.8 bits (112), Expect = 3e-05
Identities = 22/40 (55%), Positives = 31/40 (77%)
Frame = -2
Query: 438 AYAAMMVLERYFSTSGKDTELVLPKNLELQGKLRKGPPKD 319
AY+AMM+LERYFS+SG+ ++VLPK +LQ KL + +D
Sbjct: 195 AYSAMMILERYFSSSGQGAKIVLPKQPQLQSKLLEKSRQD 234
>ref|NP_701446.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23496613|gb|AAN36170.1|AE014845_25 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 4440
Score = 31.2 bits (69), Expect = 3.1
Identities = 14/55 (25%), Positives = 32/55 (57%)
Frame = -3
Query: 407 ISPLRVRILNLFCQRI*NCKENSERVLPKTMIFSQMKINHQNKCFLPITSVANFM 243
++P+ ++I+ FC N K+ + + K MIF I++ N C+L ++ + +++
Sbjct: 1539 VTPILIKII--FCMLKSNIKKKGQHKMRKNMIFYLSDISNNNYCYLFLSVIYSYI 1591
>ref|NP_635565.1| indolepyruvate ferredoxin oxidoreductase chain alpha [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|21111128|gb|AAM39489.1| indolepyruvate ferredoxin
oxidoreductase chain alpha [Xanthomonas campestris pv.
campestris str. ATCC 33913]
Length = 1190
Score = 30.4 bits (67), Expect = 5.2
Identities = 21/63 (33%), Positives = 29/63 (45%), Gaps = 2/63 (3%)
Frame = -3
Query: 401 PLRVRILNLFCQRI*NCKENS--ERVLPKTMIFSQMKINHQNKCFLPITSVANFMPGKG* 228
P RV I +L C+ +C E S VLPK F + + Q+ C + V+ F P
Sbjct: 605 PKRVMINSLVCEGCGDCGEKSFCVSVLPKDTEFGRKREIDQSNCNKDYSCVSGFCPSFVT 664
Query: 227 YHG 219
HG
Sbjct: 665 VHG 667
>ref|NP_640545.1| indolepyruvate ferredoxin oxidoreductase chain alpha [Xanthomonas
axonopodis pv. citri str. 306]
gi|21106247|gb|AAM35081.1| indolepyruvate ferredoxin
oxidoreductase chain alpha [Xanthomonas axonopodis pv.
citri str. 306]
Length = 1189
Score = 30.4 bits (67), Expect = 5.2
Identities = 21/63 (33%), Positives = 29/63 (45%), Gaps = 2/63 (3%)
Frame = -3
Query: 401 PLRVRILNLFCQRI*NCKENS--ERVLPKTMIFSQMKINHQNKCFLPITSVANFMPGKG* 228
P RV I +L C+ +C E S VLPK F + + Q+ C + V+ F P
Sbjct: 605 PKRVMINSLVCEGCGDCGEKSFCVSVLPKETEFGRKRQIDQSNCNKDYSCVSGFCPSFVT 664
Query: 227 YHG 219
HG
Sbjct: 665 VHG 667
>ref|NP_700684.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23495076|gb|AAN35408.1|AE014832_30 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 4431
Score = 30.0 bits (66), Expect = 6.8
Identities = 19/68 (27%), Positives = 38/68 (54%), Gaps = 4/68 (5%)
Frame = +2
Query: 92 NTVVEKVEALK--QVTPKTLTYLKTIIFLFSHNFLMHTDN**AS--SHGINLYRA*NLPQ 259
N++ +K++ +K +++PK++ YL TI ++++ DN + S I LY+ N P
Sbjct: 1279 NSIPKKIKRIKREEISPKSIKYLDTIPKYIKLFYVLNNDNYIFNFFSKKIQLYKYANTPD 1338
Query: 260 KLLAKSIY 283
K+ +Y
Sbjct: 1339 KIHQIKMY 1346
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 352,717,513
Number of Sequences: 1393205
Number of extensions: 6778605
Number of successful extensions: 17835
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 17537
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17835
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 6722674608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
