Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003095A_C01 KMC003095A_c01
(530 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196762.1| putative protein; protein id: At5g12010.1, supp... 125 4e-28
gb|AAO22738.1| unknown protein [Arabidopsis thaliana] gi|2897363... 124 7e-28
gb|AAM64474.1| unknown [Arabidopsis thaliana] 124 7e-28
ref|NP_567834.1| expressed protein; protein id: At4g29780.1, sup... 124 7e-28
dbj|BAC05572.1| B1097D05.23 [Oryza sativa (japonica cultivar-gro... 124 9e-28
>ref|NP_196762.1| putative protein; protein id: At5g12010.1, supported by cDNA:
gi_16604351 [Arabidopsis thaliana]
gi|11280502|pir||T48560 hypothetical protein F14F18.180
- Arabidopsis thaliana gi|7573368|emb|CAB87674.1|
putative protein [Arabidopsis thaliana]
gi|16604352|gb|AAL24182.1| AT5g12010/F14F18_180
[Arabidopsis thaliana] gi|25141199|gb|AAN73294.1|
At5g12010/F14F18_180 [Arabidopsis thaliana]
Length = 502
Score = 125 bits (313), Expect = 4e-28
Identities = 56/80 (70%), Positives = 68/80 (85%)
Frame = +2
Query: 290 GTATTPPRRLWVKDRSKDWWERCSHPDFPEEEFRRSFRMSKATFEMICRELDSAVTKKNT 469
GT + RRLWVKDRS+ WWE CS D+PEE+F+++FRMSK+TFE+IC EL+SAV K++T
Sbjct: 143 GTGSGQQRRLWVKDRSRAWWEECSRLDYPEEDFKKAFRMSKSTFELICDELNSAVAKEDT 202
Query: 470 MLREAIPVRQRVAVCIWRLA 529
LR AIPVRQRVAVCIWRLA
Sbjct: 203 ALRNAIPVRQRVAVCIWRLA 222
>gb|AAO22738.1| unknown protein [Arabidopsis thaliana] gi|28973634|gb|AAO64139.1|
unknown protein [Arabidopsis thaliana]
Length = 540
Score = 124 bits (311), Expect = 7e-28
Identities = 55/83 (66%), Positives = 68/83 (81%), Gaps = 1/83 (1%)
Frame = +2
Query: 284 SDGTATTPP-RRLWVKDRSKDWWERCSHPDFPEEEFRRSFRMSKATFEMICRELDSAVTK 460
+ G+ + P RRLWVK+R+ DWW+R S PDFPE+EFRR FRMSK+TF +IC ELD+ VTK
Sbjct: 178 ASGSGSGPSHRRLWVKERTTDWWDRVSRPDFPEDEFRREFRMSKSTFNLICEELDTTVTK 237
Query: 461 KNTMLREAIPVRQRVAVCIWRLA 529
KNTMLR+AIP +RV VC+WRLA
Sbjct: 238 KNTMLRDAIPAPKRVGVCVWRLA 260
>gb|AAM64474.1| unknown [Arabidopsis thaliana]
Length = 515
Score = 124 bits (311), Expect = 7e-28
Identities = 55/83 (66%), Positives = 68/83 (81%), Gaps = 1/83 (1%)
Frame = +2
Query: 284 SDGTATTPP-RRLWVKDRSKDWWERCSHPDFPEEEFRRSFRMSKATFEMICRELDSAVTK 460
+ G+ + P RRLWVK+R+ DWW+R S PDFPE+EFRR FRMSK+TF +IC ELD+ VTK
Sbjct: 153 ASGSGSGPSHRRLWVKERTTDWWDRVSRPDFPEDEFRREFRMSKSTFNLICEELDTTVTK 212
Query: 461 KNTMLREAIPVRQRVAVCIWRLA 529
KNTMLR+AIP +RV VC+WRLA
Sbjct: 213 KNTMLRDAIPAPKRVGVCVWRLA 235
>ref|NP_567834.1| expressed protein; protein id: At4g29780.1, supported by cDNA:
249769. [Arabidopsis thaliana] gi|7452044|pir||T08539
hypothetical protein F27B13.20 - Arabidopsis thaliana
gi|4914402|emb|CAB43653.1| hypothetical protein
[Arabidopsis thaliana] gi|7269877|emb|CAB79736.1|
hypothetical protein [Arabidopsis thaliana]
Length = 515
Score = 124 bits (311), Expect = 7e-28
Identities = 55/83 (66%), Positives = 68/83 (81%), Gaps = 1/83 (1%)
Frame = +2
Query: 284 SDGTATTPP-RRLWVKDRSKDWWERCSHPDFPEEEFRRSFRMSKATFEMICRELDSAVTK 460
+ G+ + P RRLWVK+R+ DWW+R S PDFPE+EFRR FRMSK+TF +IC ELD+ VTK
Sbjct: 153 ASGSGSGPSHRRLWVKERTTDWWDRVSRPDFPEDEFRREFRMSKSTFNLICEELDTTVTK 212
Query: 461 KNTMLREAIPVRQRVAVCIWRLA 529
KNTMLR+AIP +RV VC+WRLA
Sbjct: 213 KNTMLRDAIPAPKRVGVCVWRLA 235
>dbj|BAC05572.1| B1097D05.23 [Oryza sativa (japonica cultivar-group)]
Length = 551
Score = 124 bits (310), Expect = 9e-28
Identities = 56/80 (70%), Positives = 66/80 (82%)
Frame = +2
Query: 290 GTATTPPRRLWVKDRSKDWWERCSHPDFPEEEFRRSFRMSKATFEMICRELDSAVTKKNT 469
G A RRLWVKDRS+ WW++C+ PD+PEEEFRR+FRM + TF+MIC L SAV K++T
Sbjct: 193 GGAGHHQRRLWVKDRSRAWWDKCNSPDYPEEEFRRAFRMGRETFDMICEALGSAVAKEDT 252
Query: 470 MLREAIPVRQRVAVCIWRLA 529
MLR AIPVRQRVAVCIWRLA
Sbjct: 253 MLRAAIPVRQRVAVCIWRLA 272
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 556,869,785
Number of Sequences: 1393205
Number of extensions: 14661736
Number of successful extensions: 81015
Number of sequences better than 10.0: 377
Number of HSP's better than 10.0 without gapping: 64649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 78831
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
