Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003093A_C01 KMC003093A_c01
(549 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_187461.1| MATE efflux family protein, putative; protein i... 112 3e-24
gb|AAL82672.1|AC092387_20 putative membrane protein [Oryza sativ... 90 2e-17
pir||D96551 hypothetical protein F11M15.20 [imported] - Arabidop... 82 3e-15
gb|AAO42040.1| unknown protein [Arabidopsis thaliana] gi|2897323... 81 7e-15
ref|NP_181367.1| hypothetical protein; protein id: At2g38330.1 [... 65 5e-10
>ref|NP_187461.1| MATE efflux family protein, putative; protein id: At3g08040.1,
supported by cDNA: gi_15912322, supported by cDNA:
gi_15982819, supported by cDNA: gi_19310968 [Arabidopsis
thaliana] gi|6648216|gb|AAF21214.1|AC013483_38 putative
integral membrane protein [Arabidopsis thaliana]
gi|12321554|gb|AAG50830.1|AC074395_4 MATE efflux family
protein, putative [Arabidopsis thaliana]
gi|15912323|gb|AAL08295.1| T8G24.8/T8G24.8 [Arabidopsis
thaliana] gi|15982820|gb|AAL09757.1| T8G24.8/T8G24.8
[Arabidopsis thaliana]
gi|19310969|gb|AAL86700.1|AF448231_1 ferric reductase
defective [Arabidopsis thaliana]
gi|22137274|gb|AAM91482.1| At3g08040/T8G24.8
[Arabidopsis thaliana]
Length = 526
Score = 112 bits (280), Expect = 3e-24
Identities = 52/77 (67%), Positives = 63/77 (81%)
Frame = -3
Query: 547 AFVFDGVNYGASDFAYSAYSLVIVSLASVATIFLLYRSEGFIGIWIALTIYMSLRMFAGI 368
AFV DGVN+GASDFAY+AYS+V V+ S+A + + ++ GFIGIWIALTIYM+LR GI
Sbjct: 445 AFVLDGVNFGASDFAYTAYSMVGVAAISIAAVIYMAKTNGFIGIWIALTIYMALRAITGI 504
Query: 367 WRMGTGTGPWRFLRGQS 317
RM TGTGPWRFLRG+S
Sbjct: 505 ARMATGTGPWRFLRGRS 521
>gb|AAL82672.1|AC092387_20 putative membrane protein [Oryza sativa (japonica cultivar-group)]
Length = 501
Score = 89.7 bits (221), Expect = 2e-17
Identities = 40/65 (61%), Positives = 51/65 (77%)
Frame = -3
Query: 547 AFVFDGVNYGASDFAYSAYSLVIVSLASVATIFLLYRSEGFIGIWIALTIYMSLRMFAGI 368
AFVFDG+NYGASDF Y+AYS+++V++ S+ I L GF+GIWIALT+YMSLRM AG
Sbjct: 435 AFVFDGINYGASDFGYAAYSMILVAIVSIIFIVTLASYNGFVGIWIALTVYMSLRMLAGF 494
Query: 367 WRMGT 353
R+ T
Sbjct: 495 LRINT 499
>pir||D96551 hypothetical protein F11M15.20 [imported] - Arabidopsis thaliana
gi|4836944|gb|AAD30646.1|AC006085_19 Hypothetical
protein [Arabidopsis thaliana]
Length = 501
Score = 82.4 bits (202), Expect = 3e-15
Identities = 37/62 (59%), Positives = 46/62 (73%)
Frame = -3
Query: 547 AFVFDGVNYGASDFAYSAYSLVIVSLASVATIFLLYRSEGFIGIWIALTIYMSLRMFAGI 368
AFVFDGVN+GASDF Y+A SLV+V++ S+ + L + GFIG+W LTIYMSLR G
Sbjct: 440 AFVFDGVNFGASDFGYAAASLVMVAIVSILCLLFLSSTHGFIGLWFGLTIYMSLRAAVGF 499
Query: 367 WR 362
WR
Sbjct: 500 WR 501
>gb|AAO42040.1| unknown protein [Arabidopsis thaliana] gi|28973233|gb|AAO63941.1|
unknown protein [Arabidopsis thaliana]
Length = 521
Score = 81.3 bits (199), Expect = 7e-15
Identities = 36/73 (49%), Positives = 49/73 (66%)
Frame = -3
Query: 547 AFVFDGVNYGASDFAYSAYSLVIVSLASVATIFLLYRSEGFIGIWIALTIYMSLRMFAGI 368
AFV DG+ YG SDF ++AYS+VIV S + + + G GIW L ++M+LR+ AG
Sbjct: 441 AFVLDGLYYGVSDFGFAAYSMVIVGFISSLFMLVAAPTFGLAGIWTGLFLFMALRLVAGA 500
Query: 367 WRMGTGTGPWRFL 329
WR+GT TGPW+ L
Sbjct: 501 WRLGTRTGPWKML 513
>ref|NP_181367.1| hypothetical protein; protein id: At2g38330.1 [Arabidopsis
thaliana] gi|7487160|pir||T02512 hypothetical protein
At2g38330 [imported] - Arabidopsis thaliana
gi|3395439|gb|AAC28771.1| hypothetical protein
[Arabidopsis thaliana]
Length = 539
Score = 65.1 bits (157), Expect = 5e-10
Identities = 30/70 (42%), Positives = 42/70 (59%)
Frame = -3
Query: 547 AFVFDGVNYGASDFAYSAYSLVIVSLASVATIFLLYRSEGFIGIWIALTIYMSLRMFAGI 368
AFV DG+ YG SDF ++AYS+VIV S + + + G GIW L ++M+LR+ AG
Sbjct: 441 AFVLDGLYYGVSDFGFAAYSMVIVGFISSLFMLVAAPTFGLAGIWTGLFLFMALRLVAGA 500
Query: 367 WRMGTGTGPW 338
WR+ W
Sbjct: 501 WRILRHVSDW 510
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 448,775,803
Number of Sequences: 1393205
Number of extensions: 9553417
Number of successful extensions: 31579
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 27334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30579
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
