Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003092A_C01 KMC003092A_c01
(496 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T11751 transcription repressor ROM1 - kidney bean gi|135485... 74 1e-12
gb|AAK14790.1| G-box binding factor bZIP transcription factor [C... 61 6e-09
emb|CAC00656.1| common plant regulatory factor 5 [Petroselinum c... 57 9e-08
pir||S42393 G-box-binding protein - tomato gi|456753|emb|CAA5289... 56 2e-07
gb|AAG01130.1|AF273333_15 BAC19.15 [Lycopersicon esculentum] 56 2e-07
>pir||T11751 transcription repressor ROM1 - kidney bean
gi|1354857|gb|AAB36514.1| bZIP transcriptional repressor
ROM1
Length = 339
Score = 73.6 bits (179), Expect = 1e-12
Identities = 34/40 (85%), Positives = 39/40 (97%)
Frame = -2
Query: 495 TLREELRKLSEECEKLTSENSSIKKELDRLCGPETVANLG 376
TLREEL++LSEECEKLTSENSSIK+EL+R+CGPE VANLG
Sbjct: 300 TLREELQRLSEECEKLTSENSSIKEELERMCGPEAVANLG 339
>gb|AAK14790.1| G-box binding factor bZIP transcription factor [Catharanthus
roseus]
Length = 316
Score = 61.2 bits (147), Expect = 6e-09
Identities = 28/38 (73%), Positives = 34/38 (88%)
Frame = -2
Query: 492 LREELRKLSEECEKLTSENSSIKKELDRLCGPETVANL 379
LR+EL++LSEECEKLTSEN+SIK EL R+CGPE V+ L
Sbjct: 260 LRDELQRLSEECEKLTSENNSIKDELTRVCGPEAVSKL 297
>emb|CAC00656.1| common plant regulatory factor 5 [Petroselinum crispum]
Length = 352
Score = 57.4 bits (137), Expect = 9e-08
Identities = 26/40 (65%), Positives = 36/40 (90%)
Frame = -2
Query: 495 TLREELRKLSEECEKLTSENSSIKKELDRLCGPETVANLG 376
+LR+EL++LSEECEK+TSEN++IK+EL R+ GPE V+ LG
Sbjct: 303 SLRDELKRLSEECEKVTSENNTIKEELIRVYGPEEVSKLG 342
>pir||S42393 G-box-binding protein - tomato gi|456753|emb|CAA52896.1| G-box
binding protein [Lycopersicon esculentum]
Length = 283
Score = 56.2 bits (134), Expect = 2e-07
Identities = 25/39 (64%), Positives = 34/39 (87%)
Frame = -2
Query: 495 TLREELRKLSEECEKLTSENSSIKKELDRLCGPETVANL 379
+L++EL++LSEECEKLTSEN+ IK+EL LCGP+ V+ L
Sbjct: 228 SLKDELQRLSEECEKLTSENNLIKEELTLLCGPDVVSKL 266
>gb|AAG01130.1|AF273333_15 BAC19.15 [Lycopersicon esculentum]
Length = 436
Score = 56.2 bits (134), Expect = 2e-07
Identities = 25/39 (64%), Positives = 34/39 (87%)
Frame = -2
Query: 495 TLREELRKLSEECEKLTSENSSIKKELDRLCGPETVANL 379
+L++EL++LSEECEKLTSEN+ IK+EL LCGP+ V+ L
Sbjct: 381 SLKDELQRLSEECEKLTSENNLIKEELTLLCGPDVVSKL 419
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 375,223,598
Number of Sequences: 1393205
Number of extensions: 7075110
Number of successful extensions: 16692
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 16093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16689
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14493193850
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
