Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003091A_C01 KMC003091A_c01
(399 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_701460.1| 3',5'-cyclic-nucleotide phosphodiesterase, puta... 32 2.5
ref|XP_284871.1| similar to phosphoglucomutase [Mus musculus] 30 7.2
sp|O60035|PDC2_CANAL PDC2 protein gi|3005850|emb|CAA76580.1| pyr... 30 7.2
ref|ZP_00091695.1| hypothetical protein [Azotobacter vinelandii] 30 7.2
gb|ZP_00024031.1| hypothetical protein [Ralstonia metallidurans] 30 7.2
>ref|NP_701460.1| 3',5'-cyclic-nucleotide phosphodiesterase, putative [Plasmodium
falciparum 3D7] gi|23496627|gb|AAN36184.1|AE014845_39
3',5'-cyclic-nucleotide phosphodiesterase, putative
[Plasmodium falciparum 3D7]
Length = 842
Score = 31.6 bits (70), Expect = 2.5
Identities = 19/59 (32%), Positives = 26/59 (43%)
Frame = -2
Query: 395 LVSAELNFEEILLKPFYPLFFFPLSACNLYCQQLCLTSIQILVEKSH*YIIRDSSVYMH 219
L+ +NFEEI L FY F F L +LY +C +L Y + +Y H
Sbjct: 237 LIFQNINFEEIFLNTFYSSFPFKLFLHSLYMIFICFIYFVVL------YFMLLKKIYTH 289
>ref|XP_284871.1| similar to phosphoglucomutase [Mus musculus]
Length = 471
Score = 30.0 bits (66), Expect = 7.2
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +3
Query: 75 SPHNTNGVSLPMVCLVPRLISGSWESRTKPILYITLLLSISF*LIEM*MHVHT 233
S H+T V L M+ P +I+ + ESRT L I LLS + + H+HT
Sbjct: 127 SRHSTTRVRLVMLLTGPYMINNTKESRTSETLSIWCLLSHQ--IPDFISHIHT 177
>sp|O60035|PDC2_CANAL PDC2 protein gi|3005850|emb|CAA76580.1| pyruvate decarboxylase
regulator [Candida albicans]
Length = 836
Score = 30.0 bits (66), Expect = 7.2
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +2
Query: 224 CTHYYPLLYINVISLLGFGY*LGTVVDNRGYKLIKEKKIEDRKALIIFLQNLIQQK 391
C+H+ L IN+ V+DNRGY L K K+++ L +L+++I Q+
Sbjct: 126 CSHFVKKLNINITGSPR------DVLDNRGYNLNKVWKLDEILELKRYLRDIIDQE 175
>ref|ZP_00091695.1| hypothetical protein [Azotobacter vinelandii]
Length = 291
Score = 30.0 bits (66), Expect = 7.2
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -1
Query: 159 LFCSPSYQKLAWEPNRPSEATRHLC 85
L+ SP Y + + EP++P+E RH C
Sbjct: 166 LYASPGYLERSGEPSKPAELERHEC 190
>gb|ZP_00024031.1| hypothetical protein [Ralstonia metallidurans]
Length = 289
Score = 30.0 bits (66), Expect = 7.2
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = -1
Query: 159 LFCSPSYQKLAWEPNRPSEATRHLCCG 79
L+ SP Y K A EP P++ H C G
Sbjct: 165 LYASPGYIKRAGEPRAPADLNHHECLG 191
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 307,652,886
Number of Sequences: 1393205
Number of extensions: 5973400
Number of successful extensions: 11583
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11449
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11583
length of database: 448,689,247
effective HSP length: 108
effective length of database: 298,223,107
effective search space used: 7157354568
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
