Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003087A_C01 KMC003087A_c01
(580 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK73693.1|AF362740_1 succinate dehydrogenase subunit 3 [Glyc... 153 1e-36
gb|AAK77126.1|AF362730_1 succinate dehydrogenase subunit 3 [Lyco... 124 6e-28
gb|AAK77127.1|AF362731_1 succinate dehydrogenase subunit 3 [Podo... 107 1e-22
gb|AAK73692.1|AF362739_1 succinate dehydrogenase subunit 3 [Goss... 105 4e-22
gb|AAK77129.1|AF362733_1 succinate dehydrogenase subunit 3 [Gymn... 103 1e-21
>gb|AAK73693.1|AF362740_1 succinate dehydrogenase subunit 3 [Glycine max]
Length = 157
Score = 153 bits (387), Expect = 1e-36
Identities = 73/88 (82%), Positives = 82/88 (92%)
Frame = -2
Query: 579 RPLSPHLPVYQPQLSSTLSIFNRIAGASLAAIIVAFYMIYMKMGLISLTYDSFYQFVFYS 400
RPLSPHLP+YQPQLSSTLSIFNRIAGA LA +I+ FYMIYMK+GL+SLTYDSFYQF+FYS
Sbjct: 70 RPLSPHLPLYQPQLSSTLSIFNRIAGAFLAGVILVFYMIYMKLGLVSLTYDSFYQFIFYS 129
Query: 399 SKLNLLAIEISALATTYHLYSAIRHLLV 316
SKLNLL +EISALA +YHLYSAIRHL +
Sbjct: 130 SKLNLLVMEISALAVSYHLYSAIRHLFL 157
>gb|AAK77126.1|AF362730_1 succinate dehydrogenase subunit 3 [Lycopersicon esculentum]
Length = 108
Score = 124 bits (312), Expect = 6e-28
Identities = 56/87 (64%), Positives = 75/87 (85%)
Frame = -2
Query: 579 RPLSPHLPVYQPQLSSTLSIFNRIAGASLAAIIVAFYMIYMKMGLISLTYDSFYQFVFYS 400
RPLSPHLP+Y+PQL+ST SIF+RI+GA LA I+ FY++ +K+GLI TY++FYQF FYS
Sbjct: 5 RPLSPHLPIYKPQLTSTFSIFHRISGAFLATIVFFFYLLCLKIGLICFTYENFYQFFFYS 64
Query: 399 SKLNLLAIEISALATTYHLYSAIRHLL 319
SKL L+++EI+ALA +YHLY+ +RHLL
Sbjct: 65 SKLILISVEITALALSYHLYNGVRHLL 91
>gb|AAK77127.1|AF362731_1 succinate dehydrogenase subunit 3 [Podophyllum peltatum]
Length = 95
Score = 107 bits (266), Expect = 1e-22
Identities = 47/79 (59%), Positives = 67/79 (84%)
Frame = -2
Query: 555 VYQPQLSSTLSIFNRIAGASLAAIIVAFYMIYMKMGLISLTYDSFYQFVFYSSKLNLLAI 376
+Y+P+L+ST SIF+RI+GA LA I++ Y++Y+KMG I TY++FYQF+FYSSKL L+ +
Sbjct: 1 IYKPELTSTFSIFHRISGAFLATIVLFCYLLYLKMGFICFTYENFYQFLFYSSKLILILV 60
Query: 375 EISALATTYHLYSAIRHLL 319
EI+ALA +YHLY+ +RHLL
Sbjct: 61 EITALALSYHLYNGVRHLL 79
>gb|AAK73692.1|AF362739_1 succinate dehydrogenase subunit 3 [Gossypium hirsutum]
Length = 201
Score = 105 bits (262), Expect = 4e-22
Identities = 49/87 (56%), Positives = 65/87 (74%)
Frame = -2
Query: 579 RPLSPHLPVYQPQLSSTLSIFNRIAGASLAAIIVAFYMIYMKMGLISLTYDSFYQFVFYS 400
RPLSPHLP+Y+PQLS+TLSI NRI+G L ++ Y++ +KMG I TY +FYQF FYS
Sbjct: 107 RPLSPHLPIYKPQLSATLSITNRISGVFLTTALLFSYLLSLKMGSICFTYSNFYQFFFYS 166
Query: 399 SKLNLLAIEISALATTYHLYSAIRHLL 319
+KL + + I+ALA +YHL +RHLL
Sbjct: 167 AKLAPVTVSIAALAVSYHLCYGVRHLL 193
>gb|AAK77129.1|AF362733_1 succinate dehydrogenase subunit 3 [Gymnocladus dioica]
Length = 92
Score = 103 bits (258), Expect = 1e-21
Identities = 46/79 (58%), Positives = 67/79 (84%)
Frame = -2
Query: 555 VYQPQLSSTLSIFNRIAGASLAAIIVAFYMIYMKMGLISLTYDSFYQFVFYSSKLNLLAI 376
+Y+PQL+ST SIF+RI+GA LA I++ FY++ +K+GLI TY +FYQF+F+ SKL L+++
Sbjct: 1 IYKPQLTSTFSIFHRISGAFLATIVLFFYLLCLKIGLICFTYSNFYQFLFFLSKLILISV 60
Query: 375 EISALATTYHLYSAIRHLL 319
EI+ALA +YHLY+ +RHLL
Sbjct: 61 EITALALSYHLYNGVRHLL 79
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,336,352
Number of Sequences: 1393205
Number of extensions: 9337276
Number of successful extensions: 18425
Number of sequences better than 10.0: 82
Number of HSP's better than 10.0 without gapping: 18025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18413
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
