Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003085A_C01 KMC003085A_c01
(552 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52392 hypothetical protein MMB12.11 [imported] - Arabidops... 145 3e-34
ref|NP_188598.1| unknown protein; protein id: At3g19640.1 [Arabi... 145 3e-34
dbj|BAB92573.1| P0497A05.17 [Oryza sativa (japonica cultivar-gro... 103 1e-21
dbj|BAB89805.1| P0677H08.20 [Oryza sativa (japonica cultivar-gro... 98 8e-20
ref|NP_565247.1| expressed protein; protein id: At1g80900.1, sup... 79 5e-14
>pir||T52392 hypothetical protein MMB12.11 [imported] - Arabidopsis thaliana
gi|9294429|dbj|BAB02549.1|
gb|AAF18497.1~gene_id:MMB12.11~similar to unknown
protein [Arabidopsis thaliana]
gi|23306416|gb|AAN17435.1| unknown protein [Arabidopsis
thaliana] gi|25360820|gb|AAN73213.1| MRS2-3 [Arabidopsis
thaliana]
Length = 484
Score = 145 bits (366), Expect = 3e-34
Identities = 71/94 (75%), Positives = 79/94 (83%)
Frame = -2
Query: 551 REYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIKIELFNPDIA 372
REYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLV+SAF+ VAG+FGMNI IELF +
Sbjct: 391 REYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVMSAFIAVAGVFGMNITIELFTDNKH 450
Query: 371 GMREFLWTVGGSTAGTIFLYVVAIAWCKHKRLLE 270
G F+WTV G + G+I LYV AI WCK+KRLLE
Sbjct: 451 GPSRFIWTVIGGSIGSICLYVGAIGWCKYKRLLE 484
>ref|NP_188598.1| unknown protein; protein id: At3g19640.1 [Arabidopsis thaliana]
Length = 477
Score = 145 bits (366), Expect = 3e-34
Identities = 71/94 (75%), Positives = 79/94 (83%)
Frame = -2
Query: 551 REYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIKIELFNPDIA 372
REYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLV+SAF+ VAG+FGMNI IELF +
Sbjct: 384 REYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVMSAFIAVAGVFGMNITIELFTDNKH 443
Query: 371 GMREFLWTVGGSTAGTIFLYVVAIAWCKHKRLLE 270
G F+WTV G + G+I LYV AI WCK+KRLLE
Sbjct: 444 GPSRFIWTVIGGSIGSICLYVGAIGWCKYKRLLE 477
>dbj|BAB92573.1| P0497A05.17 [Oryza sativa (japonica cultivar-group)]
gi|20804927|dbj|BAB92606.1| P0456E05.5 [Oryza sativa
(japonica cultivar-group)]
Length = 444
Score = 103 bits (258), Expect = 1e-21
Identities = 56/100 (56%), Positives = 68/100 (68%), Gaps = 6/100 (6%)
Frame = -2
Query: 551 REYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIKIELF----- 387
REYVDDTEDYINIMLDDKQN LLQMGVML+TAT+V++A V V G+FGMNI I L+
Sbjct: 345 REYVDDTEDYINIMLDDKQNQLLQMGVMLSTATVVITAGVAVVGLFGMNIGISLYADPTN 404
Query: 386 -NPDIAGMREFLWTVGGSTAGTIFLYVVAIAWCKHKRLLE 270
A +F T G+ AG +Y+VA+ W K LL+
Sbjct: 405 EEEKRASNMKFWETTLGTIAGCTVMYIVAMGWGKRSGLLQ 444
>dbj|BAB89805.1| P0677H08.20 [Oryza sativa (japonica cultivar-group)]
Length = 418
Score = 97.8 bits (242), Expect = 8e-20
Identities = 54/100 (54%), Positives = 70/100 (70%), Gaps = 6/100 (6%)
Frame = -2
Query: 551 REYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIKIELF----N 384
REY DDTEDYINIMLD+KQN LLQMGVMLTTAT+VV+A +VV +FGMNI I+L
Sbjct: 319 REYADDTEDYINIMLDEKQNQLLQMGVMLTTATVVVTAGIVVVSLFGMNIHIDLMKDPET 378
Query: 383 PDIAGM--REFLWTVGGSTAGTIFLYVVAIAWCKHKRLLE 270
P++ M F T G+ AG I +Y++AI + ++L+
Sbjct: 379 PEMVRMSNMHFWETTFGTVAGCIAIYLLAIYAGRKSKILQ 418
>ref|NP_565247.1| expressed protein; protein id: At1g80900.1, supported by cDNA:
17164. [Arabidopsis thaliana] gi|25352404|pir||H96841
hypothetical protein F23A5.26 [imported] - Arabidopsis
thaliana gi|6503302|gb|AAF14678.1|AC011713_26 Is a
member of PF|01544 CorA-like Mg2+ transporter protein
family. ESTs gb|Z48392 and gb|Z48391 come from this
gene. [Arabidopsis thaliana]
Length = 443
Score = 78.6 bits (192), Expect = 5e-14
Identities = 40/93 (43%), Positives = 61/93 (65%)
Frame = -2
Query: 551 REYVDDTEDYINIMLDDKQNHLLQMGVMLTTATLVVSAFVVVAGIFGMNIKIELFNPDIA 372
+EY+DDTED+INI LD+ +N L+Q ++LTTAT VV+ F VVAGIFGMN +I+ F A
Sbjct: 353 KEYIDDTEDFINIQLDNVRNQLIQFELLLTTATFVVAIFGVVAGIFGMNFEIDFFEKPGA 412
Query: 371 GMREFLWTVGGSTAGTIFLYVVAIAWCKHKRLL 273
F W + + + +++ + + K +RL+
Sbjct: 413 ----FKWVLAITGVCGLVVFLAFLWYYKRRRLM 441
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,799,581
Number of Sequences: 1393205
Number of extensions: 10653698
Number of successful extensions: 33507
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 31648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33392
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
