Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003081A_C01 KMC003081A_c01
(724 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_199898.1| pyruvate dehydrogenase E1 component beta subuni... 295 6e-79
gb|AAA52225.1| pyruvate dehydrogenase E1 beta subunit gi|1090498... 295 6e-79
gb|AAC72192.1| pyruvate dehydrogenase E1 beta subunit isoform 1 ... 291 8e-78
gb|AAC72193.1| pyruvate dehydrogenase E1 beta subunit isoform 2 ... 290 1e-77
gb|AAC72194.1| pyruvate dehydrogenase E1 beta subunit isoform 3 ... 289 3e-77
>ref|NP_199898.1| pyruvate dehydrogenase E1 component beta subunit, mitochondrial
precursor (PDHE1-B) (sp Q38799); protein id:
At5g50850.1, supported by cDNA: gi_17979465, supported
by cDNA: gi_565064 [Arabidopsis thaliana]
gi|21431823|sp|Q38799|ODPB_ARATH Pyruvate dehydrogenase
E1 component beta subunit, mitochondrial precursor
(PDHE1-B) gi|8953766|dbj|BAA98121.1| pyruvate
dehydrogenase E1 component beta subunit, mitochondrial
precursor (PDHE1-B) [Arabidopsis thaliana]
gi|17979466|gb|AAL50070.1| AT5g50850/K16E14_1
[Arabidopsis thaliana] gi|23507745|gb|AAN38676.1|
At5g50850/K16E14_1 [Arabidopsis thaliana]
Length = 363
Score = 295 bits (754), Expect = 6e-79
Identities = 145/170 (85%), Positives = 157/170 (92%)
Frame = +1
Query: 214 RLSALAFSSLRQFSSVAKEMTVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKITKGL 393
R + A S R +++ AKEMTVR+ALNSA+DEEMSADPKVF+MGEEVG+YQGAYKITKGL
Sbjct: 17 RRTRFALVSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGL 76
Query: 394 LEKYGPERVLDTPITEAGFTGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYM 573
LEKYGPERV DTPITEAGFTGIGVGAAY GL+PVVEFMTFNFSMQAIDHIINSAAKSNYM
Sbjct: 77 LEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYM 136
Query: 574 SAGQINVPIVFTGPNGAAAGVGAQHSQCYASWYGSWPGLKVLSPYSSEDA 723
SAGQINVPIVF GPNGAAAGVGAQHSQCYA+WY S PGLKVL+PYS+EDA
Sbjct: 137 SAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDA 186
>gb|AAA52225.1| pyruvate dehydrogenase E1 beta subunit gi|1090498|prf||2019230A
pyruvate dehydrogenase
Length = 363
Score = 295 bits (754), Expect = 6e-79
Identities = 145/170 (85%), Positives = 157/170 (92%)
Frame = +1
Query: 214 RLSALAFSSLRQFSSVAKEMTVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKITKGL 393
R + A S R +++ AKEMTVR+ALNSA+DEEMSADPKVF+MGEEVG+YQGAYKITKGL
Sbjct: 17 RRTRFALVSARSYAAGAKEMTVRDALNSAIDEEMSADPKVFVMGEEVGQYQGAYKITKGL 76
Query: 394 LEKYGPERVLDTPITEAGFTGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYM 573
LEKYGPERV DTPITEAGFTGIGVGAAY GL+PVVEFMTFNFSMQAIDHIINSAAKSNYM
Sbjct: 77 LEKYGPERVYDTPITEAGFTGIGVGAAYAGLKPVVEFMTFNFSMQAIDHIINSAAKSNYM 136
Query: 574 SAGQINVPIVFTGPNGAAAGVGAQHSQCYASWYGSWPGLKVLSPYSSEDA 723
SAGQINVPIVF GPNGAAAGVGAQHSQCYA+WY S PGLKVL+PYS+EDA
Sbjct: 137 SAGQINVPIVFRGPNGAAAGVGAQHSQCYAAWYASVPGLKVLAPYSAEDA 186
>gb|AAC72192.1| pyruvate dehydrogenase E1 beta subunit isoform 1 [Zea mays]
Length = 373
Score = 291 bits (744), Expect = 8e-78
Identities = 143/177 (80%), Positives = 160/177 (89%)
Frame = +1
Query: 193 CGVLQGSRLSALAFSSLRQFSSVAKEMTVREALNSALDEEMSADPKVFLMGEEVGEYQGA 372
C + Q ++ A + R +S+ AKE+TVREALN+ALDEEMSADP VFLMGEEVGEYQGA
Sbjct: 13 CVLAQLAQALRPAAAPARTYSAAAKEITVREALNTALDEEMSADPSVFLMGEEVGEYQGA 72
Query: 373 YKITKGLLEKYGPERVLDTPITEAGFTGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINS 552
YKI+KGLL+KYGP+RVLDTPITEAGFTGIGVGAAY+GLRP+VEFMTFNFSMQAIDHIINS
Sbjct: 73 YKISKGLLDKYGPDRVLDTPITEAGFTGIGVGAAYHGLRPIVEFMTFNFSMQAIDHIINS 132
Query: 553 AAKSNYMSAGQINVPIVFTGPNGAAAGVGAQHSQCYASWYGSWPGLKVLSPYSSEDA 723
AAKSNYMSAGQI+VPIVF GPNGAAAGVGAQHSQCYA+WY PGLKVL+PYS+EDA
Sbjct: 133 AAKSNYMSAGQISVPIVFRGPNGAAAGVGAQHSQCYAAWYAHVPGLKVLAPYSAEDA 189
>gb|AAC72193.1| pyruvate dehydrogenase E1 beta subunit isoform 2 [Zea mays]
Length = 374
Score = 290 bits (743), Expect = 1e-77
Identities = 141/167 (84%), Positives = 156/167 (92%)
Frame = +1
Query: 223 ALAFSSLRQFSSVAKEMTVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKITKGLLEK 402
A+A R +S+ AKEMTVR+ALNSALDEEMSADP VFLMGEEVGEYQGAYKI+KGLL++
Sbjct: 25 AVAAEVARGYSAAAKEMTVRDALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDR 84
Query: 403 YGPERVLDTPITEAGFTGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAG 582
YGP+RVLDTPITEAGFTGIGVGAAY+GLRP++EFMTFNFSMQAIDHIINSAAKSNYMSAG
Sbjct: 85 YGPDRVLDTPITEAGFTGIGVGAAYHGLRPIIEFMTFNFSMQAIDHIINSAAKSNYMSAG 144
Query: 583 QINVPIVFTGPNGAAAGVGAQHSQCYASWYGSWPGLKVLSPYSSEDA 723
QI+VPIVF GPNGAAAGVGAQHSQCYA+W+ PGLKVL+PYSSEDA
Sbjct: 145 QISVPIVFRGPNGAAAGVGAQHSQCYAAWFAHVPGLKVLTPYSSEDA 191
>gb|AAC72194.1| pyruvate dehydrogenase E1 beta subunit isoform 3 [Zea mays]
Length = 374
Score = 289 bits (739), Expect = 3e-77
Identities = 143/167 (85%), Positives = 153/167 (90%)
Frame = +1
Query: 223 ALAFSSLRQFSSVAKEMTVREALNSALDEEMSADPKVFLMGEEVGEYQGAYKITKGLLEK 402
A A R +S+ AKEMTVR+ALNSALDEEMSADP VFLMGEEVGEYQGAYKI+KGLL+K
Sbjct: 25 AAAAEVARGYSAAAKEMTVRDALNSALDEEMSADPSVFLMGEEVGEYQGAYKISKGLLDK 84
Query: 403 YGPERVLDTPITEAGFTGIGVGAAYYGLRPVVEFMTFNFSMQAIDHIINSAAKSNYMSAG 582
YGP+RVLDTPITEAGFTGIGVGAAY GLRPV+EFMTFNFSMQAIDHIINSAAKSNYMSAG
Sbjct: 85 YGPDRVLDTPITEAGFTGIGVGAAYQGLRPVIEFMTFNFSMQAIDHIINSAAKSNYMSAG 144
Query: 583 QINVPIVFTGPNGAAAGVGAQHSQCYASWYGSWPGLKVLSPYSSEDA 723
QI+VPIVF GPNGAAAGVGAQHSQCYA W+ PGLKVL+PYSSEDA
Sbjct: 145 QISVPIVFRGPNGAAAGVGAQHSQCYAVWFAHVPGLKVLTPYSSEDA 191
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 635,087,927
Number of Sequences: 1393205
Number of extensions: 14160777
Number of successful extensions: 55824
Number of sequences better than 10.0: 291
Number of HSP's better than 10.0 without gapping: 53774
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55708
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
