Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003078A_C02 KMC003078A_c02
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG13436.1|AC051634_17 hypothetical protein [Oryza sativa (ja... 103 1e-21
ref|NP_201188.1| unknown protein; protein id: At5g63830.1 [Arabi... 77 1e-13
ref|NP_357486.1| AGR_L_3392p [Agrobacterium tumefaciens] gi|1793... 33 1.7
emb|CAA89015.1| HRE165 [Saccharomyces cerevisiae] gi|1589352|prf... 33 2.3
ref|NP_500355.1| Predicted CDS, putative plasma membrane membran... 33 3.0
>gb|AAG13436.1|AC051634_17 hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 218
Score = 103 bits (257), Expect = 1e-21
Identities = 54/114 (47%), Positives = 75/114 (65%)
Frame = -3
Query: 548 DDVISLLALGSSALVCALCDMRRLVQEGGKENKSERRPRRLRKDEIRSAIKMAERKIYFI 369
DD+ISLL LG +ALVCALCD RRL+ G + K+E+ + R + ++ A+RK+YF+
Sbjct: 107 DDIISLLTLGGNALVCALCDFRRLIHIGERMLKAEKLGKAERSRSTQK-LRAADRKLYFM 165
Query: 368 MCWVHEQPEEAWSSLAAIVGAEKVSAVEFHGSNKAERLLNNKAETKSRCLIEEI 207
CWVHEQP EAWSSLA +V +K S E ++ +R K + +S+ LIEEI
Sbjct: 166 TCWVHEQPNEAWSSLARLVEVQKASLEELDCGSQFQR-AGRKNDAQSKVLIEEI 218
>ref|NP_201188.1| unknown protein; protein id: At5g63830.1 [Arabidopsis thaliana]
gi|10177671|dbj|BAB11031.1| gene_id:MGI19.3~unknown
protein [Arabidopsis thaliana]
Length = 406
Score = 77.4 bits (189), Expect = 1e-13
Identities = 40/90 (44%), Positives = 57/90 (62%)
Frame = -3
Query: 548 DDVISLLALGSSALVCALCDMRRLVQEGGKENKSERRPRRLRKDEIRSAIKMAERKIYFI 369
DDVI L+LGS A+VC L D++RL+ KE KS +++ +K+AERK++++
Sbjct: 297 DDVICFLSLGSGAMVCLLGDLQRLILGAIKEVKSSSGR------DLKKKLKLAERKVFYM 350
Query: 368 MCWVHEQPEEAWSSLAAIVGAEKVSAVEFH 279
MCWV+EQ E W +L V AEK S VE +
Sbjct: 351 MCWVNEQNSEVWEALEPSVRAEKNSVVELN 380
>ref|NP_357486.1| AGR_L_3392p [Agrobacterium tumefaciens]
gi|17936823|ref|NP_533612.1| ABC transporter, membrane
spanning protein [sugar] [Agrobacterium tumefaciens str.
C58 (U. Washington)] gi|25297942|pir||E98343
hypothetical protein AGR_L_3392 [imported] -
Agrobacterium tumefaciens (strain C58, Cereon)
gi|25297953|pir||AB2939 hypothetical protein Atu3112
[imported] - Agrobacterium tumefaciens (strain C58,
Dupont) gi|15160292|gb|AAK90271.1| AGR_L_3392p
[Agrobacterium tumefaciens str. C58 (Cereon)]
gi|17741480|gb|AAL43928.1| ABC transporter, membrane
spanning protein [sugar] [Agrobacterium tumefaciens str.
C58 (U. Washington)]
Length = 291
Score = 33.5 bits (75), Expect = 1.7
Identities = 18/39 (46%), Positives = 21/39 (53%)
Frame = +2
Query: 230 FWFLLYCSTIFQPYYSHEIPQLIPFLLPQWLPKKTKLPL 346
FWF L T+ PY+ IPQ I FL W+ T LPL
Sbjct: 119 FWFALMLGTLMLPYHVVLIPQYILFLEMGWV--NTSLPL 155
>emb|CAA89015.1| HRE165 [Saccharomyces cerevisiae] gi|1589352|prf||2210407G HRE165
gene
Length = 165
Score = 33.1 bits (74), Expect = 2.3
Identities = 19/55 (34%), Positives = 30/55 (54%)
Frame = +3
Query: 372 EIYLPLCHLNSTSNLILPQPSWPSF*FVLLSAFLNQPTHIAKGTHQSRTSQCKKT 536
E++ L +L +T++ ILP W SF ++ A N PT IA + S+ S +T
Sbjct: 92 EMFCVLINLTTTASKILPINGWISFENLVNMATTNGPTFIAAESDTSKDSSLSRT 146
>ref|NP_500355.1| Predicted CDS, putative plasma membrane membrane protein family
member, with at least 9 transmembrane domains, nematode
specific [Caenorhabditis elegans]
gi|25396020|pir||H88649 protein C09G12.6 [imported] -
Caenorhabditis elegans gi|2702395|gb|AAC25817.1|
Hypothetical protein C09G12.6 [Caenorhabditis elegans]
Length = 606
Score = 32.7 bits (73), Expect = 3.0
Identities = 17/40 (42%), Positives = 24/40 (59%)
Frame = +2
Query: 203 VKSPLLNICFWFLLYCSTIFQPYYSHEIPQLIPFLLPQWL 322
+K +L I FWFL + Q +Y+HEI L+ FLL +L
Sbjct: 239 MKDLILGI-FWFLANVTVDIQKWYTHEIVYLVVFLLTNFL 277
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,221,293
Number of Sequences: 1393205
Number of extensions: 9763203
Number of successful extensions: 29619
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 28667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29600
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
