Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003076A_C01 KMC003076A_c01
(621 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC84706.1| aux/IAA protein [Populus tremula x Populus tremu... 48 1e-04
gb|AAN16888.1| Aux/IAA3 [Mirabilis jalapa] 47 2e-04
emb|CAC84710.1| aux/IAA protein [Populus tremula x Populus tremu... 47 2e-04
ref|NP_171921.1| putative auxin-induced protein, IAA17/AXR3-1; p... 47 3e-04
gb|AAC39440.1| IAA17/AXR3-1 protein [Arabidopsis thaliana] 47 3e-04
>emb|CAC84706.1| aux/IAA protein [Populus tremula x Populus tremuloides]
Length = 365
Score = 47.8 bits (112), Expect = 1e-04
Identities = 22/25 (88%), Positives = 25/25 (100%)
Frame = -1
Query: 609 QRLRIMKSSEAIGLAPRAMEKCKSR 535
+RLRIMKSS+AIGLAPRAMEKCK+R
Sbjct: 340 KRLRIMKSSDAIGLAPRAMEKCKNR 364
>gb|AAN16888.1| Aux/IAA3 [Mirabilis jalapa]
Length = 48
Score = 47.4 bits (111), Expect = 2e-04
Identities = 22/26 (84%), Positives = 25/26 (95%)
Frame = -1
Query: 609 QRLRIMKSSEAIGLAPRAMEKCKSRT 532
+RLRIMK SEAIGLAPRA+EKCKSR+
Sbjct: 23 KRLRIMKGSEAIGLAPRAVEKCKSRS 48
>emb|CAC84710.1| aux/IAA protein [Populus tremula x Populus tremuloides]
Length = 277
Score = 47.4 bits (111), Expect = 2e-04
Identities = 22/26 (84%), Positives = 24/26 (91%)
Frame = -1
Query: 609 QRLRIMKSSEAIGLAPRAMEKCKSRT 532
+R RIMK SEA+GLAPRAMEKCKSRT
Sbjct: 252 KRPRIMKGSEAVGLAPRAMEKCKSRT 277
>ref|NP_171921.1| putative auxin-induced protein, IAA17/AXR3-1; protein id:
At1g04250.1, supported by cDNA: 33613., supported by
cDNA: gi_12484196, supported by cDNA: gi_2618722
[Arabidopsis thaliana] gi|11131276|sp|P93830|AXIH_ARATH
Auxin-responsive protein IAA17 (Indoleacetic
acid-induced protein 17) (Auxin response 3)
gi|25296226|pir||H86173 hypothetical protein [imported]
- Arabidopsis thaliana gi|2618723|gb|AAB84354.1| IAA17
[Arabidopsis thaliana] gi|2921756|gb|AAC39439.1|
IAA17/AXR3 protein [Arabidopsis thaliana]
gi|4389514|gb|AAB70451.2| Identical to Arabidopsis
gb|AF040632 and gb|U49073 IAA17/AXR3 gene. ESTs
gb|H36782 and gb|F14074 come from this gene.
[Arabidopsis thaliana]
gi|12484197|gb|AAG53997.1|AF336916_1 auxin-induced
protein, IAA17/AXR3-1 [Arabidopsis thaliana]
gi|17979185|gb|AAL49831.1| auxin-induced protein
IAA17/AXR3-1 [Arabidopsis thaliana]
gi|21436239|gb|AAM51258.1| auxin-induced protein
IAA17/AXR3-1 [Arabidopsis thaliana]
Length = 229
Score = 46.6 bits (109), Expect = 3e-04
Identities = 21/25 (84%), Positives = 24/25 (96%)
Frame = -1
Query: 609 QRLRIMKSSEAIGLAPRAMEKCKSR 535
+RLR+MK S+AIGLAPRAMEKCKSR
Sbjct: 204 KRLRLMKGSDAIGLAPRAMEKCKSR 228
>gb|AAC39440.1| IAA17/AXR3-1 protein [Arabidopsis thaliana]
Length = 229
Score = 46.6 bits (109), Expect = 3e-04
Identities = 21/25 (84%), Positives = 24/25 (96%)
Frame = -1
Query: 609 QRLRIMKSSEAIGLAPRAMEKCKSR 535
+RLR+MK S+AIGLAPRAMEKCKSR
Sbjct: 204 KRLRLMKGSDAIGLAPRAMEKCKSR 228
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,161,312
Number of Sequences: 1393205
Number of extensions: 9899321
Number of successful extensions: 18764
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 18138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18742
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
