Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003075A_C01 KMC003075A_c01
(766 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL86506.1|AC099040_10 putative hydroxyproline-rich glycoprot... 228 6e-59
ref|NP_566356.1| expressed protein; protein id: At3g09770.1, sup... 222 4e-57
ref|NP_190909.1| putative protein; protein id: At3g53410.1, supp... 197 2e-49
gb|AAM67190.1| putative RING zinc finger protein [Arabidopsis th... 194 9e-49
dbj|BAC41920.1| unknown protein [Arabidopsis thaliana] 194 9e-49
>gb|AAL86506.1|AC099040_10 putative hydroxyproline-rich glycoprotein [Oryza sativa (japonica
cultivar-group)] gi|20279471|gb|AAM18751.1|AC099325_7
unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 425
Score = 228 bits (582), Expect = 6e-59
Identities = 114/156 (73%), Positives = 128/156 (81%), Gaps = 2/156 (1%)
Frame = -2
Query: 765 EAELLKVGDMDVYPVAVKADASSGDHDGSE-ETPASGNTNSQITQAVFE-KEKGEFRVKV 592
+AEL K G+MDVYP+AVKA+ + SE E S NSQITQAVFE KE G++ V+V
Sbjct: 247 DAELFKEGEMDVYPLAVKAETTFSIGQFSEGEEQKSQTPNSQITQAVFERKENGDYHVRV 306
Query: 591 VKQILWVNGMRYELQEIYGIGNSMESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSG 412
VKQILWVNG RYELQEIYGIGNS+E D +GNDPGKECVICLSEPRDTTVLPCRHMCMCS
Sbjct: 307 VKQILWVNGTRYELQEIYGIGNSVEGDTEGNDPGKECVICLSEPRDTTVLPCRHMCMCSE 366
Query: 411 CAKVLRFQTNRCPICRQPVERLLEIKVRPEPTEPEE 304
CAKVLR+QTNRCPICRQPVERLLEIKV + E ++
Sbjct: 367 CAKVLRYQTNRCPICRQPVERLLEIKVNNKGEEQQQ 402
>ref|NP_566356.1| expressed protein; protein id: At3g09770.1, supported by cDNA:
38757., supported by cDNA: gi_18377643 [Arabidopsis
thaliana] gi|6681341|gb|AAF23258.1|AC015985_16 putative
RING zinc finger protein [Arabidopsis thaliana]
gi|6682260|gb|AAF23312.1|AC016661_37 unknown protein
[Arabidopsis thaliana] gi|18377644|gb|AAL66972.1|
putative RING zinc finger protein [Arabidopsis thaliana]
gi|21593417|gb|AAM65384.1| putative RING zinc finger
protein [Arabidopsis thaliana]
Length = 388
Score = 222 bits (566), Expect = 4e-57
Identities = 109/150 (72%), Positives = 125/150 (82%), Gaps = 5/150 (3%)
Frame = -2
Query: 765 EAELLKVG-DMDVYPVAVKADASSGDHDGSEETPASGNTNSQITQAVFEKEKGEFRVKVV 589
+ EL K D ++YP+AVKA+A+ + EE SG+ N+QITQAV+EK+KGE +++VV
Sbjct: 221 DVELFKAAADTEIYPLAVKAEAAPSGGENEEEE-RSGSKNAQITQAVYEKDKGEIKIRVV 279
Query: 588 KQILWVNGMRYELQEIYGIGNSMESDLDG----NDPGKECVICLSEPRDTTVLPCRHMCM 421
KQILWVNG RYELQEIYGIGN++E D D NDPGKECVICLSEPRDTTVLPCRHMCM
Sbjct: 280 KQILWVNGTRYELQEIYGIGNTVEGDDDSADDANDPGKECVICLSEPRDTTVLPCRHMCM 339
Query: 420 CSGCAKVLRFQTNRCPICRQPVERLLEIKV 331
CSGCAKVLRFQTNRCPICRQPVERLLEIKV
Sbjct: 340 CSGCAKVLRFQTNRCPICRQPVERLLEIKV 369
>ref|NP_190909.1| putative protein; protein id: At3g53410.1, supported by cDNA:
110247. [Arabidopsis thaliana] gi|11357789|pir||T45881
hypothetical protein F4P12.110 - Arabidopsis thaliana
gi|6729492|emb|CAB67648.1| putative protein [Arabidopsis
thaliana] gi|21536752|gb|AAM61084.1| putative RING zinc
finger protein [Arabidopsis thaliana]
gi|27808570|gb|AAO24565.1| At3g53410 [Arabidopsis
thaliana]
Length = 299
Score = 197 bits (500), Expect = 2e-49
Identities = 99/147 (67%), Positives = 116/147 (78%), Gaps = 2/147 (1%)
Frame = -2
Query: 765 EAELLKVGDMDVYPVAVKADASSGDHDGSEETPASGNTNSQITQAVFEKE-KGEFRVKVV 589
EA+L++ + DVY VAVKA+ S D + P SG N QIT V EK+ KGE++ +VV
Sbjct: 152 EADLVEANETDVYHVAVKAEVVSED-----DHPESGTPNRQITHVVLEKDHKGEYKARVV 206
Query: 588 KQILWVNGMRYELQEIYGIGNSMESD-LDGNDPGKECVICLSEPRDTTVLPCRHMCMCSG 412
KQILWVNG RY LQEIYGIGN+++ + D N+ GKECVICLSEPRDTTVLPCRHMCMCSG
Sbjct: 207 KQILWVNGNRYVLQEIYGIGNTVDDNGEDANERGKECVICLSEPRDTTVLPCRHMCMCSG 266
Query: 411 CAKVLRFQTNRCPICRQPVERLLEIKV 331
CAK+LRFQTN CPICRQPV+RLLEI V
Sbjct: 267 CAKLLRFQTNLCPICRQPVDRLLEITV 293
>gb|AAM67190.1| putative RING zinc finger protein [Arabidopsis thaliana]
Length = 337
Score = 194 bits (494), Expect = 9e-49
Identities = 96/143 (67%), Positives = 112/143 (78%)
Frame = -2
Query: 765 EAELLKVGDMDVYPVAVKADASSGDHDGSEETPASGNTNSQITQAVFEKEKGEFRVKVVK 586
++EL K D DV+P+AVKA+A+ E SG+TN QITQ V+ KEKGE +++VVK
Sbjct: 201 DSELFKEVDTDVFPLAVKAEATPA------EEGKSGSTNVQITQVVYTKEKGEIKIEVVK 254
Query: 585 QILWVNGMRYELQEIYGIGNSMESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCA 406
QILWVN RYEL EIYGI N++ DG+D GKECV+CLSEPRDTTVLPCRHMCMCSGCA
Sbjct: 255 QILWVNKRRYELLEIYGIENTV----DGSDEGKECVVCLSEPRDTTVLPCRHMCMCSGCA 310
Query: 405 KVLRFQTNRCPICRQPVERLLEI 337
K LRFQTN CP+CRQPVE LLEI
Sbjct: 311 KALRFQTNLCPVCRQPVEMLLEI 333
>dbj|BAC41920.1| unknown protein [Arabidopsis thaliana]
Length = 337
Score = 194 bits (494), Expect = 9e-49
Identities = 96/143 (67%), Positives = 112/143 (78%)
Frame = -2
Query: 765 EAELLKVGDMDVYPVAVKADASSGDHDGSEETPASGNTNSQITQAVFEKEKGEFRVKVVK 586
++EL K D DV+P+AVKA+A+ E SG+TN QITQ V+ KEKGE +++VVK
Sbjct: 201 DSELFKEVDTDVFPLAVKAEATPA------EEGKSGSTNVQITQVVYTKEKGEIKIEVVK 254
Query: 585 QILWVNGMRYELQEIYGIGNSMESDLDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCA 406
QILWVN RYEL EIYGI N++ DG+D GKECV+CLSEPRDTTVLPCRHMCMCSGCA
Sbjct: 255 QILWVNKRRYELLEIYGIENTV----DGSDEGKECVVCLSEPRDTTVLPCRHMCMCSGCA 310
Query: 405 KVLRFQTNRCPICRQPVERLLEI 337
K LRFQTN CP+CRQPVE LLEI
Sbjct: 311 KALRFQTNLCPVCRQPVEMLLEI 333
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 695,111,787
Number of Sequences: 1393205
Number of extensions: 15917224
Number of successful extensions: 43845
Number of sequences better than 10.0: 846
Number of HSP's better than 10.0 without gapping: 41399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43546
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37254821786
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
