Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003073A_C01 KMC003073A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568987.1| expressed protein; protein id: At5g64230.1, sup... 130 1e-29
ref|NP_188626.1| unknown protein; protein id: At3g19920.1 [Arabi... 69 5e-11
dbj|BAB01307.1| gene_id:MPN9.17~unknown protein [Arabidopsis tha... 69 5e-11
dbj|BAC43081.1| unknown protein [Arabidopsis thaliana] gi|289510... 69 5e-11
ref|NP_566255.1| Expressed protein; protein id: At3g05675.1, sup... 34 1.0
>ref|NP_568987.1| expressed protein; protein id: At5g64230.1, supported by cDNA:
gi_15293016 [Arabidopsis thaliana]
gi|15293017|gb|AAK93619.1| unknown protein [Arabidopsis
thaliana]
Length = 271
Score = 130 bits (327), Expect = 1e-29
Identities = 63/115 (54%), Positives = 84/115 (72%), Gaps = 4/115 (3%)
Frame = -2
Query: 552 LLKEXKEMGL----DEIEESKMKHALPVKLKMLLSWLPLLCSASNGTDTPALSISERGEL 385
L KE K++ +E EE+K++ +K KML+SW+PLLC ASNG D P L +ER L
Sbjct: 159 LFKEAKDIKKGSEEEEGEEAKLRE---IKKKMLISWIPLLCRASNGADKPVLRSAERAYL 215
Query: 384 ERVLEGIIERLEQEEQEQVLSLWLHHFTHCSSSDWPNLHACFARWCTKSRKQLLL 220
E+VLE +I L++EEQE+VLSLWLHH+THC+SSDWP+L+ + RWC SR+ LLL
Sbjct: 216 EKVLEKMISELKEEEQERVLSLWLHHYTHCASSDWPDLNGSYVRWCHSSRQLLLL 270
>ref|NP_188626.1| unknown protein; protein id: At3g19920.1 [Arabidopsis thaliana]
Length = 457
Score = 68.6 bits (166), Expect = 5e-11
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = -2
Query: 483 VKLKMLLSWLPLLCSASNGTDTPALSISERGELERVLEGIIERLEQEEQEQVLSLWLHHF 304
V ++L +WLPL A NG P L+ ER E+ER ++ I L +QE +L+ WL F
Sbjct: 372 VTFRLLANWLPLFSHARNGLAFPVLTGYERVEVERAIDKAISTLPALDQEILLTNWLQDF 431
Query: 303 THCSSSDWPNLHACFARWCTKSRK 232
+ S+S+WPNL + RWC +R+
Sbjct: 432 S-VSASEWPNLQPAYDRWCHSTRQ 454
>dbj|BAB01307.1| gene_id:MPN9.17~unknown protein [Arabidopsis thaliana]
Length = 416
Score = 68.6 bits (166), Expect = 5e-11
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = -2
Query: 483 VKLKMLLSWLPLLCSASNGTDTPALSISERGELERVLEGIIERLEQEEQEQVLSLWLHHF 304
V ++L +WLPL A NG P L+ ER E+ER ++ I L +QE +L+ WL F
Sbjct: 331 VTFRLLANWLPLFSHARNGLAFPVLTGYERVEVERAIDKAISTLPALDQEILLTNWLQDF 390
Query: 303 THCSSSDWPNLHACFARWCTKSRK 232
+ S+S+WPNL + RWC +R+
Sbjct: 391 S-VSASEWPNLQPAYDRWCHSTRQ 413
>dbj|BAC43081.1| unknown protein [Arabidopsis thaliana] gi|28951003|gb|AAO63425.1|
At3g19920 [Arabidopsis thaliana]
Length = 416
Score = 68.6 bits (166), Expect = 5e-11
Identities = 34/84 (40%), Positives = 50/84 (59%)
Frame = -2
Query: 483 VKLKMLLSWLPLLCSASNGTDTPALSISERGELERVLEGIIERLEQEEQEQVLSLWLHHF 304
V ++L +WLPL A NG P L+ ER E+ER ++ I L +QE +L+ WL F
Sbjct: 331 VAFRLLANWLPLFSHARNGLAFPVLTGYERVEVERAIDKAISTLPALDQEILLTNWLQDF 390
Query: 303 THCSSSDWPNLHACFARWCTKSRK 232
+ S+S+WPNL + RWC +R+
Sbjct: 391 S-VSASEWPNLQPAYDRWCHSTRQ 413
>ref|NP_566255.1| Expressed protein; protein id: At3g05675.1, supported by cDNA:
121720., supported by cDNA: gi_20259408 [Arabidopsis
thaliana] gi|20259409|gb|AAM14025.1| unknown protein
[Arabidopsis thaliana]
Length = 441
Score = 34.3 bits (77), Expect = 1.0
Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 12/94 (12%)
Frame = -2
Query: 480 KLKMLLSWLPLLCSASNGTDTPALSISER--------GELERVLE----GIIERLEQEEQ 337
+L+M+ WLP + + D+P E GE+ + LE II L +Q
Sbjct: 335 RLQMVKLWLPFVRNTKPLVDSPVREDEENDTVRYKIDGEIWQALESSFVSIILALPSADQ 394
Query: 336 EQVLSLWLHHFTHCSSSDWPNLHACFARWCTKSR 235
++L+ WL + +P+L F WC +S+
Sbjct: 395 AEILTEWL-----SKNGLYPDLTEAFEVWCYRSK 423
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 454,439,677
Number of Sequences: 1393205
Number of extensions: 9778883
Number of successful extensions: 28867
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 27403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28817
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
