Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003070A_C01 KMC003070A_c01
(618 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S48032 cim1 protein - soybean gi|555616|gb|AAA50175.1| cyto... 159 4e-38
gb|AAB60916.1| Similar to Holcus major pollen allergen (gb|Z2708... 114 8e-25
ref|NP_564860.1| pollen allergen, putative [Arabidopsis thaliana... 114 8e-25
gb|AAK56130.1|AF332180_1 beta-expansin 7 [Zea mays] 113 2e-24
ref|NP_564861.2| expansin, putative; protein id: At1g65685.1 [Ar... 110 1e-23
>pir||S48032 cim1 protein - soybean gi|555616|gb|AAA50175.1| cytokinin induced
message
Length = 277
Score = 159 bits (401), Expect = 4e-38
Identities = 77/98 (78%), Positives = 80/98 (81%)
Frame = -2
Query: 617 HVDSDSNPPYLAILIEYEDGDGDLASVELKEALDSDSWDSMPPSWGAVWKFDKGSPLEAP 438
HVDS SN Y A L+EYEDGDGDLA VELKEALDS SWDSM SWGAVWKFDKGSPL AP
Sbjct: 180 HVDSGSNQEYFATLVEYEDGDGDLAKVELKEALDSGSWDSMQQSWGAVWKFDKGSPLRAP 239
Query: 437 FSIKLTTPESG*TIVANHVIPANWTPGPTYRSIAELCS 324
FSIKLTT ESG TIVAN+VIPA WTPG TYRSI +
Sbjct: 240 FSIKLTTLESGQTIVANNVIPAGWTPGQTYRSIVNFAT 277
>gb|AAB60916.1| Similar to Holcus major pollen allergen (gb|Z27084). [Arabidopsis
thaliana]
Length = 276
Score = 114 bits (286), Expect = 8e-25
Identities = 52/91 (57%), Positives = 67/91 (73%)
Frame = -2
Query: 614 VDSDSNPPYLAILIEYEDGDGDLASVELKEALDSDSWDSMPPSWGAVWKFDKGSPLEAPF 435
VD SN A+L+ Y +GDG++ +ELK+ALDSD W SM SWGAVWK D SPL AP
Sbjct: 182 VDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVWKLDVSSPLRAPL 241
Query: 434 SIKLTTPESG*TIVANHVIPANWTPGPTYRS 342
S+++T+ ESG T+VA++VIPANW PG Y+S
Sbjct: 242 SLRVTSLESGKTVVASNVIPANWQPGAIYKS 272
>ref|NP_564860.1| pollen allergen, putative [Arabidopsis thaliana]
gi|20138423|sp|Q9SHY6|EXB2_ARATH Putative beta-expansin
2 precursor (At-EXPB2) (Ath-ExpBeta-1.4)
Length = 273
Score = 114 bits (286), Expect = 8e-25
Identities = 52/91 (57%), Positives = 67/91 (73%)
Frame = -2
Query: 614 VDSDSNPPYLAILIEYEDGDGDLASVELKEALDSDSWDSMPPSWGAVWKFDKGSPLEAPF 435
VD SN A+L+ Y +GDG++ +ELK+ALDSD W SM SWGAVWK D SPL AP
Sbjct: 179 VDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVWKLDVSSPLRAPL 238
Query: 434 SIKLTTPESG*TIVANHVIPANWTPGPTYRS 342
S+++T+ ESG T+VA++VIPANW PG Y+S
Sbjct: 239 SLRVTSLESGKTVVASNVIPANWQPGAIYKS 269
>gb|AAK56130.1|AF332180_1 beta-expansin 7 [Zea mays]
Length = 268
Score = 113 bits (282), Expect = 2e-24
Identities = 53/95 (55%), Positives = 68/95 (70%)
Frame = -2
Query: 617 HVDSDSNPPYLAILIEYEDGDGDLASVELKEALDSDSWDSMPPSWGAVWKFDKGSPLEAP 438
HV+ SNP Y A+L+E+EDGDGD V+L EA +S SW M SWG++W+ D G L AP
Sbjct: 175 HVEEGSNPVYFAVLVEFEDGDGDAVQVDLMEA-NSASWTPMRESWGSIWRLDSGHRLTAP 233
Query: 437 FSIKLTTPESG*TIVANHVIPANWTPGPTYRSIAE 333
FS+++T ESG T+VA+HVIPANW P YRSI +
Sbjct: 234 FSLRITN-ESGKTLVADHVIPANWVPNTYYRSIVQ 267
>ref|NP_564861.2| expansin, putative; protein id: At1g65685.1 [Arabidopsis thaliana]
Length = 471
Score = 110 bits (275), Expect = 1e-23
Identities = 50/86 (58%), Positives = 64/86 (74%)
Frame = -2
Query: 614 VDSDSNPPYLAILIEYEDGDGDLASVELKEALDSDSWDSMPPSWGAVWKFDKGSPLEAPF 435
VD SN A+L+ Y +GDG++ +ELK+ALDSD W SM SWGAVWK D SPL AP
Sbjct: 179 VDKGSNANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQSWGAVWKLDVSSPLRAPL 238
Query: 434 SIKLTTPESG*TIVANHVIPANWTPG 357
S+++T+ ESG T+VA++VIPANW PG
Sbjct: 239 SLRVTSLESGKTVVASNVIPANWQPG 264
Score = 90.1 bits (222), Expect = 2e-17
Identities = 43/92 (46%), Positives = 61/92 (65%)
Frame = -2
Query: 614 VDSDSNPPYLAILIEYEDGDGDLASVELKEALDSDSWDSMPPSWGAVWKFDKGSPLEAPF 435
+D +NP Y++ ++EYE+GDGDLA +E++ A + M AVWK GSPL PF
Sbjct: 378 MDPGANPYYISFVVEYENGDGDLAYIEIQPA--DGEFIPMQEMRSAVWKISSGSPLTGPF 435
Query: 434 SIKLTTPESG*TIVANHVIPANWTPGPTYRSI 339
+I+LT+ ES ++A +VIPANW P TYRS+
Sbjct: 436 NIRLTSAESHKVVLAYNVIPANWKPNETYRSV 467
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,634,687
Number of Sequences: 1393205
Number of extensions: 10969015
Number of successful extensions: 29208
Number of sequences better than 10.0: 208
Number of HSP's better than 10.0 without gapping: 27984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29016
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 24733321959
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
