Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003062A_C01 KMC003062A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA18771.1| homeobox-containing protein [Plasmodium yoelii yo... 32 6.5
ref|NP_282476.1| hypothetical protein Cj1330 [Campylobacter jeju... 32 6.5
ref|NP_102411.1| probable oxidoreductase [Mesorhizobium loti] gi... 31 8.5
>gb|EAA18771.1| homeobox-containing protein [Plasmodium yoelii yoelii]
Length = 187
Score = 31.6 bits (70), Expect = 6.5
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Frame = +1
Query: 19 NNNHKERKL---RIYYI*SSVTHHSIFNYI*ENVEVNRLSHSKKIITSNSFRTKWILKG* 189
NNN K L IY+ + H N EN++ N + K+ TSN F + L G
Sbjct: 62 NNNSKWNYLTLNNIYFYNNPTDHFDDKNK--ENLKQNGNKNKNKLKTSNKFYKSYSLNGN 119
Query: 190 ITSMIN*PIPTHHI*PIQNRL*ETPAPNMHNNNRYKARP*P*SIDIQDSESY 345
+ I ++H+ N + + N HNN YK R +ID+ + +Y
Sbjct: 120 HEN-----IESYHLKTDTNS--KQGSKNKHNNRTYKKRN---TIDLNNLNNY 161
>ref|NP_282476.1| hypothetical protein Cj1330 [Campylobacter jejuni]
gi|11346738|pir||G81276 hypothetical protein Cj1330
[imported] - Campylobacter jejuni (strain NCTC 11168)
gi|6968764|emb|CAB73757.1| hypothetical protein Cj1330
[Campylobacter jejuni subsp. jejuni NCTC 11168]
Length = 301
Score = 31.6 bits (70), Expect = 6.5
Identities = 22/80 (27%), Positives = 37/80 (45%)
Frame = -3
Query: 282 VVHVWSRCLSKSVLYWLNMMCRYGLIYHRSDSTFQNPFCSKAVGSDYLLRVTQSIDLNIF 103
V+ R L +Y+ +++C L + R+ QN K +G LL ++ IDL F
Sbjct: 114 VIVALKRLLKGEKIYFASLVCNSYLPHWRALDYRQNYSAKKELGGGVLLDLSHEIDLAFF 173
Query: 102 LYIIKN*MMCNT*LDVVYSQ 43
L+ L+++YSQ
Sbjct: 174 LF---------KDLELIYSQ 184
>ref|NP_102411.1| probable oxidoreductase [Mesorhizobium loti]
gi|14021585|dbj|BAB48197.1| probable oxidoreductase
[Mesorhizobium loti]
Length = 369
Score = 31.2 bits (69), Expect = 8.5
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 8/71 (11%)
Frame = -3
Query: 387 SKSFMLSMDEGH-------RKVAFRILNINASRLRTCFVSIVVVHVWSRCL-SKSVLYWL 232
+ F ++M G+ RK R ++ + RL T ++ + ++HVW R ++ V+ L
Sbjct: 84 ASKFTMNMQPGNPNAGGNGRKNILRAVDASLKRLGTDYIDLYLMHVWDRLTPAEEVMRTL 143
Query: 231 NMMCRYGLIYH 199
+ + R G + H
Sbjct: 144 DDLVRMGKVRH 154
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 421,690,072
Number of Sequences: 1393205
Number of extensions: 8263309
Number of successful extensions: 16610
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16567
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
