Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003060A_C01 KMC003060A_c01
(602 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD33924.1| alpha-expansin 4 [Cicer arietinum] 43 0.003
gb|AAM22628.1|AF428181_1 expansin 14 precursor [Rumex palustris] 41 0.014
gb|AAM22632.1|AF428185_1 expansin 18 precursor [Rumex palustris] 41 0.014
gb|AAM22627.1|AF428180_1 expansin 13 precursor [Rumex palustris] 41 0.014
emb|CAD33923.1| alpha-expansin 3 [Cicer arietinum] 40 0.018
>emb|CAD33924.1| alpha-expansin 4 [Cicer arietinum]
Length = 248
Score = 43.1 bits (100), Expect = 0.003
Identities = 18/18 (100%), Positives = 18/18 (100%)
Frame = -3
Query: 600 VAPAGWSFGQTYTGAQFR 547
VAPAGWSFGQTYTGAQFR
Sbjct: 231 VAPAGWSFGQTYTGAQFR 248
>gb|AAM22628.1|AF428181_1 expansin 14 precursor [Rumex palustris]
Length = 250
Score = 40.8 bits (94), Expect = 0.014
Identities = 16/18 (88%), Positives = 18/18 (99%)
Frame = -3
Query: 600 VAPAGWSFGQTYTGAQFR 547
VAP+GW+FGQTYTGAQFR
Sbjct: 233 VAPSGWTFGQTYTGAQFR 250
>gb|AAM22632.1|AF428185_1 expansin 18 precursor [Rumex palustris]
Length = 250
Score = 40.8 bits (94), Expect = 0.014
Identities = 16/18 (88%), Positives = 18/18 (99%)
Frame = -3
Query: 600 VAPAGWSFGQTYTGAQFR 547
VAP+GW+FGQTYTGAQFR
Sbjct: 233 VAPSGWTFGQTYTGAQFR 250
>gb|AAM22627.1|AF428180_1 expansin 13 precursor [Rumex palustris]
Length = 250
Score = 40.8 bits (94), Expect = 0.014
Identities = 16/18 (88%), Positives = 18/18 (99%)
Frame = -3
Query: 600 VAPAGWSFGQTYTGAQFR 547
VAP+GW+FGQTYTGAQFR
Sbjct: 233 VAPSGWTFGQTYTGAQFR 250
>emb|CAD33923.1| alpha-expansin 3 [Cicer arietinum]
Length = 248
Score = 40.4 bits (93), Expect = 0.018
Identities = 16/18 (88%), Positives = 18/18 (99%)
Frame = -3
Query: 600 VAPAGWSFGQTYTGAQFR 547
VAP+GWSFGQTY+GAQFR
Sbjct: 231 VAPSGWSFGQTYSGAQFR 248
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 510,265,427
Number of Sequences: 1393205
Number of extensions: 10892473
Number of successful extensions: 21714
Number of sequences better than 10.0: 65
Number of HSP's better than 10.0 without gapping: 21296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21703
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
