Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003059A_C01 KMC003059A_c01
(724 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191037.1| RRM-containing protein; protein id: At3g54770.1... 47 4e-04
gb|AAM61280.1| RNA binding protein-like [Arabidopsis thaliana] 47 4e-04
emb|CAA71945.1| klu [Drosophila melanogaster] 42 0.009
ref|NP_477062.1| klumpfuss CG12296-PA gi|23093660|gb|AAF50119.2|... 42 0.009
gb|AAO16994.1| Hypothetical protein [Oryza sativa (japonica cult... 40 0.043
>ref|NP_191037.1| RRM-containing protein; protein id: At3g54770.1, supported by cDNA:
1156. [Arabidopsis thaliana] gi|11358791|pir||T47636 RNA
binding protein-like - Arabidopsis thaliana
gi|7258381|emb|CAB77597.1| RNA binding protein-like
[Arabidopsis thaliana]
Length = 261
Score = 46.6 bits (109), Expect = 4e-04
Identities = 36/111 (32%), Positives = 48/111 (42%), Gaps = 10/111 (9%)
Frame = -1
Query: 688 HHQPLPFYGYPHTYIAAPGDMNYNYHDHQKLSYGNG---GGYYGH-----QVYPVPMYYQ 533
+HQ +PFYGYP Y+A +M +N QK+ Y G GYY Q P P YY
Sbjct: 143 NHQAVPFYGYPSAYVAP--NMTFN----QKVGYVGGTYMNGYYAQMQPQPQSQPQPQYYH 196
Query: 532 HHHHPAVYHPRATETMGLPAHMFHFATMAP--ATAQVGTGTECFGLSLSLS 386
HH + +G + M F T+ P + +G F LS S
Sbjct: 197 HHMYGG-----GRVMVGAASPMVPFYTVYPYHQSQAIGFPQPSFSKPLSFS 242
>gb|AAM61280.1| RNA binding protein-like [Arabidopsis thaliana]
Length = 261
Score = 46.6 bits (109), Expect = 4e-04
Identities = 36/111 (32%), Positives = 48/111 (42%), Gaps = 10/111 (9%)
Frame = -1
Query: 688 HHQPLPFYGYPHTYIAAPGDMNYNYHDHQKLSYGNG---GGYYGH-----QVYPVPMYYQ 533
+HQ +PFYGYP Y+A +M +N QK+ Y G GYY Q P P YY
Sbjct: 143 NHQAVPFYGYPSAYVAP--NMTFN----QKVGYVGGTYMNGYYAQMQPQPQSQPQPQYYH 196
Query: 532 HHHHPAVYHPRATETMGLPAHMFHFATMAP--ATAQVGTGTECFGLSLSLS 386
HH + +G + M F T+ P + +G F LS S
Sbjct: 197 HHMYGG-----GRVMVGAASPMVPFYTVYPYHQSQAIGFPQPSFSKPLSFS 242
>emb|CAA71945.1| klu [Drosophila melanogaster]
Length = 750
Score = 42.0 bits (97), Expect = 0.009
Identities = 32/105 (30%), Positives = 40/105 (37%), Gaps = 9/105 (8%)
Frame = -1
Query: 721 PPAVAPSASPYHHQPLPFYGYPHTYIAAPGDM-NYNYHDHQKLSY--------GNGGGYY 569
PP P P HH PLP H A P + N+N+H Q L + +Y
Sbjct: 21 PPQQPPQHHP-HHLPLP-----HPPPAPPPQLLNFNHHQQQYLPHMYPAAAAAAQSHSHY 74
Query: 568 GHQVYPVPMYYQHHHHPAVYHPRATETMGLPAHMFHFATMAPATA 434
G YP P QH HHP + + L A +A A A
Sbjct: 75 GGLQYPHPHALQHQHHPHQHQHHLPLALSLHQQAAAAAAVAAAVA 119
>ref|NP_477062.1| klumpfuss CG12296-PA gi|23093660|gb|AAF50119.2| CG12296-PA
[Drosophila melanogaster]
Length = 803
Score = 42.0 bits (97), Expect = 0.009
Identities = 32/105 (30%), Positives = 40/105 (37%), Gaps = 9/105 (8%)
Frame = -1
Query: 721 PPAVAPSASPYHHQPLPFYGYPHTYIAAPGDM-NYNYHDHQKLSY--------GNGGGYY 569
PP P P HH PLP H A P + N+N+H Q L + +Y
Sbjct: 21 PPQQPPQHHP-HHLPLP-----HPPPAPPPQLLNFNHHQQQYLPHMYPAAAAAAQSHSHY 74
Query: 568 GHQVYPVPMYYQHHHHPAVYHPRATETMGLPAHMFHFATMAPATA 434
G YP P QH HHP + + L A +A A A
Sbjct: 75 GGLQYPHPHALQHQHHPHQHQHHLPLALSLHQQAAAAAAVAAAVA 119
>gb|AAO16994.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 339
Score = 39.7 bits (91), Expect = 0.043
Identities = 39/122 (31%), Positives = 50/122 (40%), Gaps = 24/122 (19%)
Frame = -1
Query: 721 PPAVAPSASPYHHQP----LPFYGYPHTYIAAPG---DMNYNYHDHQKLS-YGNGGGYY- 569
PPA +A HHQ LPFY TY +P D++YN Q + +G G Y
Sbjct: 203 PPAAHYAAHGGHHQQYHGVLPFYPAATTYGYSPNYVADLSYNAKLGQAAAAHGTNGAYLQ 262
Query: 568 GHQVYP---------------VPMYYQHHHHPAVYHPRATETMGLPAHMFHFATMAPATA 434
GH YP V YYQ+H+H A + +G+PA F A A
Sbjct: 263 GHFSYPAAAQGGMLAANGMMPVYPYYQYHYHGA-------QGLGVPAAHFFPPVSAAAVT 315
Query: 433 QV 428
V
Sbjct: 316 TV 317
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 729,838,252
Number of Sequences: 1393205
Number of extensions: 18538884
Number of successful extensions: 110327
Number of sequences better than 10.0: 145
Number of HSP's better than 10.0 without gapping: 76946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104306
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
