Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003058A_C01 KMC003058A_c01
(527 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B86260 protein T12C24.18 [imported] - Arabidopsis thaliana ... 52 4e-06
ref|NP_172725.2| hypothetical protein; protein id: At1g12650.1, ... 52 4e-06
gb|AAH06293.1|AAH06293 Unknown (protein for IMAGE:4053965) [Homo... 40 0.013
gb|AAF28931.1|AF161371_1 HSPC253 [Homo sapiens] 40 0.013
ref|NP_659106.1| hypothetical protein MGC19067 [Mus musculus] gi... 40 0.013
>pir||B86260 protein T12C24.18 [imported] - Arabidopsis thaliana
gi|9502374|gb|AAF88081.1|AC025417_9 T12C24.18
[Arabidopsis thaliana]
Length = 246
Score = 52.0 bits (123), Expect = 4e-06
Identities = 21/32 (65%), Positives = 28/32 (86%)
Frame = -2
Query: 526 NELKASGKLEAFLEKRRRRNAAKDHRYIPYRR 431
N LK SGKL ++L+KRR++NA KDHR++PYRR
Sbjct: 212 NSLKESGKLTSYLDKRRKKNATKDHRFMPYRR 243
>ref|NP_172725.2| hypothetical protein; protein id: At1g12650.1, supported by cDNA:
gi_17933302, supported by cDNA: gi_20856105 [Arabidopsis
thaliana] gi|17933303|gb|AAL48234.1|AF446361_1
At1g12650/T12C24_1 [Arabidopsis thaliana]
gi|20856106|gb|AAM26648.1| At1g12650/T12C24_1
[Arabidopsis thaliana]
Length = 248
Score = 52.0 bits (123), Expect = 4e-06
Identities = 21/32 (65%), Positives = 28/32 (86%)
Frame = -2
Query: 526 NELKASGKLEAFLEKRRRRNAAKDHRYIPYRR 431
N LK SGKL ++L+KRR++NA KDHR++PYRR
Sbjct: 214 NSLKESGKLTSYLDKRRKKNATKDHRFMPYRR 245
>gb|AAH06293.1|AAH06293 Unknown (protein for IMAGE:4053965) [Homo sapiens]
Length = 262
Score = 40.4 bits (93), Expect = 0.013
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = -2
Query: 523 ELKASGKLEAFLEKRRRRNAAKDHRYIP 440
ELK S KLE FL ++RRRNA KD R++P
Sbjct: 231 ELKRSKKLENFLSRKRRRNAGKDRRHLP 258
>gb|AAF28931.1|AF161371_1 HSPC253 [Homo sapiens]
Length = 180
Score = 40.4 bits (93), Expect = 0.013
Identities = 18/28 (64%), Positives = 22/28 (78%)
Frame = -2
Query: 523 ELKASGKLEAFLEKRRRRNAAKDHRYIP 440
ELK S KLE FL ++RRRNA KD R++P
Sbjct: 149 ELKRSKKLENFLSRKRRRNAGKDRRHLP 176
>ref|NP_659106.1| hypothetical protein MGC19067 [Mus musculus]
gi|15030015|gb|AAH11248.1| Unknown (protein for
MGC:19067) [Mus musculus]
Length = 226
Score = 40.4 bits (93), Expect = 0.013
Identities = 17/28 (60%), Positives = 23/28 (81%)
Frame = -2
Query: 523 ELKASGKLEAFLEKRRRRNAAKDHRYIP 440
EL+ S KLE+FL ++RRRNA KD R++P
Sbjct: 195 ELRRSKKLESFLSRKRRRNAGKDRRHLP 222
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 467,338,093
Number of Sequences: 1393205
Number of extensions: 9901905
Number of successful extensions: 22965
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 22187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22952
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
