Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003057A_C01 KMC003057A_c01
(614 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA74052.1| Transcription factor [Arabidopsis thaliana] 120 1e-26
gb|AAG10144.1|AF250338_1 transcription factor Hap3b [Arabidopsis... 120 1e-26
ref|NP_199575.1| putative protein; protein id: At5g47640.1, supp... 120 1e-26
ref|NP_193190.1| CCAAT-binding transcription factor subunit A(CB... 110 2e-23
emb|CAA42234.1| CAAT-box DNA binding protein subunit B (NF-YB) [... 104 1e-21
>emb|CAA74052.1| Transcription factor [Arabidopsis thaliana]
Length = 187
Score = 120 bits (302), Expect = 1e-26
Identities = 64/116 (55%), Positives = 75/116 (64%), Gaps = 2/116 (1%)
Frame = -2
Query: 613 SDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKSVAARDRDAPSSN 434
SDKCQ+EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFRE+EGE++ R +
Sbjct: 72 SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQTGGEVG 131
Query: 433 ASNSSFEGGGGSY--GGGGIMMHQGHVYGSSGFHQVMGNKGGPGYPGPGSNAGRPR 272
G GG + GGGG+ HQ H + H + G GG G G+ +GR R
Sbjct: 132 EHQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNH-MYGATGGGSDSGGGAASGRTR 186
>gb|AAG10144.1|AF250338_1 transcription factor Hap3b [Arabidopsis thaliana]
Length = 123
Score = 120 bits (302), Expect = 1e-26
Identities = 64/116 (55%), Positives = 75/116 (64%), Gaps = 2/116 (1%)
Frame = -2
Query: 613 SDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKSVAARDRDAPSSN 434
SDKCQ+EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFRE+EGE++ R +
Sbjct: 8 SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQTGGEVG 67
Query: 433 ASNSSFEGGGGSY--GGGGIMMHQGHVYGSSGFHQVMGNKGGPGYPGPGSNAGRPR 272
G GG + GGGG+ HQ H + H + G GG G G+ +GR R
Sbjct: 68 EHQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNH-MYGATGGGSDSGGGAASGRTR 122
>ref|NP_199575.1| putative protein; protein id: At5g47640.1, supported by cDNA:
gi_14326579, supported by cDNA: gi_18700233 [Arabidopsis
thaliana] gi|9758792|dbj|BAB09090.1| contains similarity
to CCAAT-box-binding trancription factor~gene_id:MNJ7.23
[Arabidopsis thaliana]
gi|14326580|gb|AAK60334.1|AF385744_1 AT5g47640/MNJ7_23
[Arabidopsis thaliana] gi|18700234|gb|AAL77727.1|
AT5g47640/MNJ7_23 [Arabidopsis thaliana]
Length = 190
Score = 120 bits (302), Expect = 1e-26
Identities = 64/116 (55%), Positives = 75/116 (64%), Gaps = 2/116 (1%)
Frame = -2
Query: 613 SDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKSVAARDRDAPSSN 434
SDKCQ+EKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFRE+EGE++ R +
Sbjct: 75 SDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGLGRPQTGGEVG 134
Query: 433 ASNSSFEGGGGSY--GGGGIMMHQGHVYGSSGFHQVMGNKGGPGYPGPGSNAGRPR 272
G GG + GGGG+ HQ H + H + G GG G G+ +GR R
Sbjct: 135 EHQRDAVGDGGGFYGGGGGMQYHQHHQFLHQQNH-MYGATGGGSDSGGGAASGRTR 189
>ref|NP_193190.1| CCAAT-binding transcription factor subunit A(CBF-A); protein id:
At4g14540.1 [Arabidopsis thaliana]
gi|7443520|pir||G71407 transcription factor,
CCAAT-binding, chain A - Arabidopsis thaliana
gi|2244810|emb|CAB10233.1| CCAAT-binding transcription
factor subunit A(CBF-A) [Arabidopsis thaliana]
gi|7268160|emb|CAB78496.1| CCAAT-binding transcription
factor subunit A(CBF-A) [Arabidopsis thaliana]
gi|26450702|dbj|BAC42460.1| putative CCAAT-binding
transcription factor subunit A CBF-A [Arabidopsis
thaliana] gi|28372860|gb|AAO39912.1| At4g14540
[Arabidopsis thaliana]
Length = 161
Score = 110 bits (274), Expect = 2e-23
Identities = 55/88 (62%), Positives = 64/88 (72%), Gaps = 2/88 (2%)
Frame = -2
Query: 613 SDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEK-SVAARDRDAPSS 437
SDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQ++RE+EGEK + A R D
Sbjct: 69 SDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTTTAGRQGDKEGG 128
Query: 436 NASNSSFEGGGGS-YGGGGIMMHQGHVY 356
+ G GG+ GGG++ GH +
Sbjct: 129 GGGGGAGSGSGGAPMYGGGMVTTMGHQF 156
>emb|CAA42234.1| CAAT-box DNA binding protein subunit B (NF-YB) [Zea mays]
Length = 178
Score = 104 bits (259), Expect = 1e-21
Identities = 56/94 (59%), Positives = 65/94 (68%), Gaps = 10/94 (10%)
Frame = -2
Query: 613 SDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREMEGEKSVAARDRDAPSS- 437
SDKCQREKRKTINGDDLLWAM TLGFEDY+EPLKVYLQ++REMEG+ + A+ D
Sbjct: 79 SDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSIKK 138
Query: 436 ------NASNSSFEGGG--GSYGGG-GIMMHQGH 362
AS+S+ EG G G+Y G G M Q H
Sbjct: 139 DALGHVGASSSAAEGMGQQGAYNQGMGYMQPQYH 172
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 634,056,863
Number of Sequences: 1393205
Number of extensions: 17190234
Number of successful extensions: 138940
Number of sequences better than 10.0: 1266
Number of HSP's better than 10.0 without gapping: 68371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114627
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24854530794
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
