Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003056A_C01 KMC003056A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO37525.1| putative DNA-binding protein [Oryza sativa (japon... 112 5e-24
pir||S44281 ES43 protein - barley gi|1345528|emb|CAA54682.1| ES4... 100 1e-20
ref|NP_568053.1| ES43 like protein; protein id: At4g39100.1, sup... 98 7e-20
gb|AAM66132.1| ES43 like protein [Arabidopsis thaliana] 98 7e-20
pir||T49121 receptor like protein - Arabidopsis thaliana (fragme... 96 3e-19
>gb|AAO37525.1| putative DNA-binding protein [Oryza sativa (japonica
cultivar-group)]
Length = 218
Score = 112 bits (279), Expect = 5e-24
Identities = 46/74 (62%), Positives = 63/74 (84%), Gaps = 1/74 (1%)
Frame = -2
Query: 587 KCEMPYHPDDLMVQCEGCSDWFHPACIDMTVEEAERLDHFYCEGCSAEGQKSLQNSHSAT 408
KCEMPY+PD+LM+QCE CSDWFHP+C+++T++EA++L+HFYC+ C AE K LQ S+ AT
Sbjct: 145 KCEMPYNPDNLMIQCEDCSDWFHPSCVEITIKEAKKLEHFYCKSCIAENGKDLQKSNGAT 204
Query: 407 -RSDTKVDTKRRRR 369
+S+ KV +KRRRR
Sbjct: 205 VQSEEKVQSKRRRR 218
>pir||S44281 ES43 protein - barley gi|1345528|emb|CAA54682.1| ES43 [Hordeum
vulgare]
Length = 227
Score = 100 bits (249), Expect = 1e-20
Identities = 50/80 (62%), Positives = 62/80 (77%), Gaps = 7/80 (8%)
Frame = -2
Query: 587 KCEMPYHPDDLMVQCEGCSDWFHPACIDMTVEEAERLDHFYCEGCSAE-----GQKSLQN 423
KCEMPY+PDDLM+QCE CSDWFHPACI T++EA++L++F CEGC AE G K+ +N
Sbjct: 149 KCEMPYNPDDLMIQCEECSDWFHPACIGKTIKEAKKLENFTCEGCVAENGNANGVKN-EN 207
Query: 422 SHSAT-RSDTK-VDTKRRRR 369
SH +T SD K V +KRRRR
Sbjct: 208 SHESTGESDEKQVQSKRRRR 227
>ref|NP_568053.1| ES43 like protein; protein id: At4g39100.1, supported by cDNA:
8278., supported by cDNA: gi_10644644, supported by
cDNA: gi_15293000, supported by cDNA: gi_19310792
[Arabidopsis thaliana]
gi|10644645|gb|AAG21353.1|AF277453_1 putative PHD finger
transcription factor [Arabidopsis thaliana]
gi|15293001|gb|AAK93611.1| putative ES43 protein
[Arabidopsis thaliana] gi|19310793|gb|AAL85127.1|
putative ES43 protein [Arabidopsis thaliana]
Length = 228
Score = 98.2 bits (243), Expect = 7e-20
Identities = 44/71 (61%), Positives = 58/71 (80%), Gaps = 1/71 (1%)
Frame = -2
Query: 587 KCEMPYHPDDLMVQCEGCSDWFHPACIDMTVEEAERLDHFYCEGCSAEGQKSLQNSHSAT 408
KCEMPY+PDDLMVQCE CS+WFHP+CI T+EEA++ D+FYCE CS + Q++L NS+S +
Sbjct: 143 KCEMPYNPDDLMVQCEECSEWFHPSCIGTTIEEAKKPDNFYCEECSPQ-QQNLHNSNSTS 201
Query: 407 RS-DTKVDTKR 378
+ D KV+ KR
Sbjct: 202 NNRDAKVNGKR 212
>gb|AAM66132.1| ES43 like protein [Arabidopsis thaliana]
Length = 228
Score = 98.2 bits (243), Expect = 7e-20
Identities = 44/71 (61%), Positives = 58/71 (80%), Gaps = 1/71 (1%)
Frame = -2
Query: 587 KCEMPYHPDDLMVQCEGCSDWFHPACIDMTVEEAERLDHFYCEGCSAEGQKSLQNSHSAT 408
KCEMPY+PDDLMVQCE CS+WFHP+CI T+EEA++ D+FYCE CS + Q++L NS+S +
Sbjct: 143 KCEMPYNPDDLMVQCEECSEWFHPSCIGTTIEEAKKPDNFYCEECSPQ-QQNLHNSNSTS 201
Query: 407 RS-DTKVDTKR 378
+ D KV+ KR
Sbjct: 202 NNRDAKVNGKR 212
>pir||T49121 receptor like protein - Arabidopsis thaliana (fragment)
gi|25367621|pir||C85253 receptor like protein (partial)
[imported] - Arabidopsis thaliana
gi|3046693|emb|CAA18117.1| receptor like protein
(fragment) [Arabidopsis thaliana]
gi|7269059|emb|CAB79169.1| receptor like protein
(fragment) [Arabidopsis thaliana]
Length = 201
Score = 96.3 bits (238), Expect = 3e-19
Identities = 39/64 (60%), Positives = 51/64 (78%), Gaps = 1/64 (1%)
Frame = -2
Query: 587 KCEMPYHPDDLMVQCEGCSDWFHPACIDMTVEEAERLDHFYCEGCSAEGQ-KSLQNSHSA 411
KCEMPY+PDDLMVQCEGC DW+HPAC+ MT+EEA++LDHF C CS++ K QN ++
Sbjct: 117 KCEMPYNPDDLMVQCEGCKDWYHPACVGMTIEEAKKLDHFVCAECSSDDDVKKSQNGFTS 176
Query: 410 TRSD 399
+ +D
Sbjct: 177 SPAD 180
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,509,702
Number of Sequences: 1393205
Number of extensions: 10347803
Number of successful extensions: 25487
Number of sequences better than 10.0: 223
Number of HSP's better than 10.0 without gapping: 24639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25470
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
