Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003055A_C01 KMC003055A_c01
(464 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC42370.1| unknown protein [Arabidopsis thaliana] 34 0.66
gb|AAO51710.1| hypothetical protein [Dictyostelium discoideum] 32 2.5
ref|XP_141921.1| similar to EDAG [Homo sapiens] [Mus musculus] 32 2.5
ref|NP_201391.1| DEAD/DEAH box RNA helicase protein, putative; p... 32 3.3
ref|NP_702140.1| hypothetical protein [Plasmodium falciparum 3D7... 32 3.3
>dbj|BAC42370.1| unknown protein [Arabidopsis thaliana]
Length = 680
Score = 34.3 bits (77), Expect = 0.66
Identities = 23/74 (31%), Positives = 40/74 (53%)
Frame = +1
Query: 166 SERLKKKKHDSEIKRDEMVKLQQPLEREEITLKLQTCNGVQKVLLKQMNG*DFRTVRDPR 345
S R ++ + +I+R E + + +R+ ++ Q NGV+ +L Q N RTV D
Sbjct: 147 SPRHRQGRSCRQIRRGEARNVSEDYKRDGNPVEFQE-NGVRTEMLPQKNDQVSRTVVDVA 205
Query: 346 IVNGCDSIHRLIRS 387
+V G DS+++L S
Sbjct: 206 VVKGDDSLNKLSNS 219
>gb|AAO51710.1| hypothetical protein [Dictyostelium discoideum]
Length = 213
Score = 32.3 bits (72), Expect = 2.5
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = -2
Query: 373 CVSNRSRSRSSGHEPSENLNHSFASKEPSVPHYMFEASR*FLRAQVVAEASPSRHV*FHY 194
C N +S +EPS N F +PHY F+ F ++Q V F+Y
Sbjct: 36 CHFNNVNFKSQLNEPSRNETIQFKKASYYLPHYKFDDGIYFTQSQSV----------FNY 85
Query: 193 HASSSSTSQIG 161
+ ST+Q+G
Sbjct: 86 KKNGFSTNQLG 96
>ref|XP_141921.1| similar to EDAG [Homo sapiens] [Mus musculus]
Length = 382
Score = 32.3 bits (72), Expect = 2.5
Identities = 18/53 (33%), Positives = 32/53 (59%)
Frame = +1
Query: 154 HISLSERLKKKKHDSEIKRDEMVKLQQPLEREEITLKLQTCNGVQKVLLKQMN 312
H+ E++KK+KH+++ K+ LQ LE ++I + ++ N KVL KQ +
Sbjct: 33 HLQNREQIKKRKHEAQKKQ----MLQWHLEEQKIHKRQRSQNANHKVLKKQQS 81
>ref|NP_201391.1| DEAD/DEAH box RNA helicase protein, putative; protein id:
At5g65900.1, supported by cDNA: gi_16649120 [Arabidopsis
thaliana] gi|7446108|pir||T05883 ATP-dependent helicase
F6H11.20 - Arabidopsis thaliana
gi|2827700|emb|CAA16673.1| DEAD box ATP dependent
helicase protein [Arabidopsis thaliana]
gi|9759574|dbj|BAB11137.1| ATP-dependent RNA
helicase-like [Arabidopsis thaliana]
gi|16649121|gb|AAL24412.1| ATP-dependent RNA
helicase-like [Arabidopsis thaliana]
gi|24899721|gb|AAN65075.1| ATP-dependent RNA
helicase-like [Arabidopsis thaliana]
Length = 633
Score = 32.0 bits (71), Expect = 3.3
Identities = 17/33 (51%), Positives = 20/33 (60%)
Frame = +1
Query: 154 HISLSERLKKKKHDSEIKRDEMVKLQQPLEREE 252
H S +E +KKKKH RDE KL+QP EE
Sbjct: 9 HSSENEEIKKKKHKKRA-RDEAKKLKQPAMEEE 40
>ref|NP_702140.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497319|gb|AAN36864.1|AE014820_14 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 155
Score = 32.0 bits (71), Expect = 3.3
Identities = 20/66 (30%), Positives = 35/66 (52%), Gaps = 1/66 (1%)
Frame = +1
Query: 118 SKTPIFFFFFTSH-ISLSERLKKKKHDSEIKRDEMVKLQQPLEREEITLKLQTCNGVQKV 294
+K I+ F S I + + LKK K D+E+KR+ + ++ L RE+ +L + K
Sbjct: 18 TKNIIYIFIGISLLIFIYKILKKNKKDAEVKRNNEISIKMKLSREKQLQELDKEMMINKE 77
Query: 295 LLKQMN 312
+K+ N
Sbjct: 78 KMKEQN 83
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 350,083,183
Number of Sequences: 1393205
Number of extensions: 6773904
Number of successful extensions: 21822
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 21060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21784
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 12291312054
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
