Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003054A_C02 KMC003054A_c02
(627 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565465.1| expressed protein; protein id: At2g20130.1, sup... 132 4e-30
ref|NP_565464.1| expressed protein; protein id: At2g20120.1, sup... 131 8e-30
gb|AAK95310.1|AF410324_1 At2g20120/T2G17.8 [Arabidopsis thaliana... 128 7e-29
dbj|BAB89792.1| P0677H08.7 [Oryza sativa (japonica cultivar-group)] 125 6e-28
ref|NP_179436.1| hypothetical protein; protein id: At2g18460.1 [... 125 6e-28
>ref|NP_565465.1| expressed protein; protein id: At2g20130.1, supported by cDNA:
12246., supported by cDNA: gi_18253024 [Arabidopsis
thaliana] gi|18253025|gb|AAL62439.1| unknown protein
[Arabidopsis thaliana] gi|20197569|gb|AAD24400.2|
expressed protein [Arabidopsis thaliana]
gi|21537162|gb|AAM61503.1| unknown [Arabidopsis
thaliana] gi|22136466|gb|AAM91311.1| unknown protein
[Arabidopsis thaliana]
Length = 256
Score = 132 bits (332), Expect = 4e-30
Identities = 65/73 (89%), Positives = 67/73 (91%)
Frame = -1
Query: 627 YAFGFITSSVVLQTYSGDEELCCVYVPTNHLYIGDIFLVNVKDVIRPNLSVREGIEIVVS 448
YAFGFITS+VVLQ Y +EELCCVYVPTNHLYIGDI LVN DVIRPNLSVREGIEIVVS
Sbjct: 174 YAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLSVREGIEIVVS 233
Query: 447 GGMSMPQILSTLD 409
GGMSMPQILSTLD
Sbjct: 234 GGMSMPQILSTLD 246
>ref|NP_565464.1| expressed protein; protein id: At2g20120.1, supported by cDNA:
123469., supported by cDNA: gi_15294265, supported by
cDNA: gi_20147284 [Arabidopsis thaliana]
gi|25411966|pir||C84585 hypothetical protein At2g20120
[imported] - Arabidopsis thaliana
gi|4580461|gb|AAD24385.1| expressed protein [Arabidopsis
thaliana] gi|21537202|gb|AAM61543.1| unknown
[Arabidopsis thaliana]
Length = 268
Score = 131 bits (329), Expect = 8e-30
Identities = 64/73 (87%), Positives = 67/73 (91%)
Frame = -1
Query: 627 YAFGFITSSVVLQTYSGDEELCCVYVPTNHLYIGDIFLVNVKDVIRPNLSVREGIEIVVS 448
YAFGFITS+VVLQ Y +EELCCVYVPTNHLYIGDI LVN DVIRPNLSVREGIEIVVS
Sbjct: 184 YAFGFITSTVVLQNYPTEEELCCVYVPTNHLYIGDILLVNSNDVIRPNLSVREGIEIVVS 243
Query: 447 GGMSMPQILSTLD 409
GGMSMPQILST+D
Sbjct: 244 GGMSMPQILSTVD 256
>gb|AAK95310.1|AF410324_1 At2g20120/T2G17.8 [Arabidopsis thaliana] gi|20147285|gb|AAM10356.1|
At2g20120/T2G17.8 [Arabidopsis thaliana]
Length = 268
Score = 128 bits (321), Expect = 7e-29
Identities = 63/73 (86%), Positives = 66/73 (90%)
Frame = -1
Query: 627 YAFGFITSSVVLQTYSGDEELCCVYVPTNHLYIGDIFLVNVKDVIRPNLSVREGIEIVVS 448
YAFGFITS+VVLQ Y +EELCCVYVPTN LYIGDI LVN DVIRPNLSVREGIEIVVS
Sbjct: 184 YAFGFITSTVVLQNYPTEEELCCVYVPTNRLYIGDILLVNSNDVIRPNLSVREGIEIVVS 243
Query: 447 GGMSMPQILSTLD 409
GGMSMPQILST+D
Sbjct: 244 GGMSMPQILSTVD 256
>dbj|BAB89792.1| P0677H08.7 [Oryza sativa (japonica cultivar-group)]
Length = 259
Score = 125 bits (313), Expect = 6e-28
Identities = 57/73 (78%), Positives = 69/73 (94%)
Frame = -1
Query: 627 YAFGFITSSVVLQTYSGDEELCCVYVPTNHLYIGDIFLVNVKDVIRPNLSVREGIEIVVS 448
YAFGFITS+VVLQT GDEELC VYVPTNHLYIGDIFLVN +++IRPNLS+REGIEI+VS
Sbjct: 171 YAFGFITSTVVLQTDKGDEELCSVYVPTNHLYIGDIFLVNSEEIIRPNLSIREGIEIIVS 230
Query: 447 GGMSMPQILSTLD 409
GGM+MPQ++++L+
Sbjct: 231 GGMTMPQVIASLE 243
>ref|NP_179436.1| hypothetical protein; protein id: At2g18460.1 [Arabidopsis
thaliana] gi|25411868|pir||E84564 hypothetical protein
At2g18460 [imported] - Arabidopsis thaliana
gi|4309722|gb|AAD15492.1| hypothetical protein
[Arabidopsis thaliana]
Length = 129
Score = 125 bits (313), Expect = 6e-28
Identities = 57/74 (77%), Positives = 69/74 (93%)
Frame = -1
Query: 627 YAFGFITSSVVLQTYSGDEELCCVYVPTNHLYIGDIFLVNVKDVIRPNLSVREGIEIVVS 448
YAFGFITS+V+L+ +G EELCCVYVPTNHLY+GDIFL++ KD+IRPNLSVREGIEIV+S
Sbjct: 40 YAFGFITSTVILRGRAGGEELCCVYVPTNHLYLGDIFLISSKDIIRPNLSVREGIEIVIS 99
Query: 447 GGMSMPQILSTLDS 406
GGMS+P +L+TLDS
Sbjct: 100 GGMSIPHMLTTLDS 113
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,023,344
Number of Sequences: 1393205
Number of extensions: 11119963
Number of successful extensions: 24016
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 23297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24014
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
