Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003053A_C01 KMC003053A_c01
(972 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568327.1| lipase-like protein; protein id: At5g16120.1, s... 31 0.008
pir||T51482 lipase-like protein - Arabidopsis thaliana gi|975582... 31 0.17
ref|NP_212201.1| peptidase, putative [Borrelia burgdorferi] gi|7... 38 0.27
gb|AAK02033.2|AC074283_14 Putative lipase-like protein [Oryza sa... 28 0.46
ref|XP_226249.1| similar to APP-binding protein 1 [Rattus norveg... 36 0.78
>ref|NP_568327.1| lipase-like protein; protein id: At5g16120.1, supported by cDNA:
gi_13430613, supported by cDNA: gi_15293170 [Arabidopsis
thaliana] gi|13430614|gb|AAK25929.1|AF360219_1 putative
lipase [Arabidopsis thaliana] gi|15293171|gb|AAK93696.1|
putative lipase [Arabidopsis thaliana]
Length = 351
Score = 31.2 bits (69), Expect(2) = 0.008
Identities = 17/37 (45%), Positives = 18/37 (47%), Gaps = 19/37 (51%)
Frame = -2
Query: 680 DSCTFFFEG-------------------FGLSEGLHG 627
D+CTFFFEG FGLSEGLHG
Sbjct: 92 DTCTFFFEGIARRLALSGYGVFAMDYPGFGLSEGLHG 128
Score = 30.8 bits (68), Expect(2) = 0.008
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3
Query: 625 YIPNYDVLVDDDIEHYRIVK 566
YIP++D+LV D IEHY +K
Sbjct: 129 YIPSFDLLVQDVIEHYSNIK 148
>pir||T51482 lipase-like protein - Arabidopsis thaliana
gi|9755822|emb|CAC01853.1| lipase-like protein
[Arabidopsis thaliana]
Length = 340
Score = 30.8 bits (68), Expect(2) = 0.17
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -3
Query: 625 YIPNYDVLVDDDIEHYRIVK 566
YIP++D+LV D IEHY +K
Sbjct: 118 YIPSFDLLVQDVIEHYSNIK 137
Score = 26.6 bits (57), Expect(2) = 0.17
Identities = 10/12 (83%), Positives = 11/12 (91%)
Frame = -2
Query: 662 FEGFGLSEGLHG 627
+ GFGLSEGLHG
Sbjct: 106 YPGFGLSEGLHG 117
>ref|NP_212201.1| peptidase, putative [Borrelia burgdorferi] gi|7451499|pir||C70108
peptidase homolog - Lyme disease spirochete
gi|2687937|gb|AAC66444.1| peptidase, putative [Borrelia
burgdorferi B31]
Length = 592
Score = 37.7 bits (86), Expect = 0.27
Identities = 20/56 (35%), Positives = 33/56 (58%)
Frame = -3
Query: 409 EESVLYTNWFKRNNNRSKSGFLFMRDEKLKSHVDSKELSEEQSFQCGSLDNFQCFI 242
EES L+ ++ + N+++ LF+ +KL S V KE E ++F+ S NF CF+
Sbjct: 207 EESALFYSFLLISRNKNRKNVLFVDXKKLDSGV--KEALEMENFEIESYSNFYCFL 260
>gb|AAK02033.2|AC074283_14 Putative lipase-like protein [Oryza sativa]
Length = 464
Score = 28.1 bits (61), Expect(2) = 0.46
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = -3
Query: 625 YIPNYDVLVDDDIEHYRIVK 566
+IP++D LVDD EH+ VK
Sbjct: 236 FIPSFDTLVDDVAEHFTKVK 255
Score = 27.7 bits (60), Expect(2) = 0.46
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 19/37 (51%)
Frame = -2
Query: 680 DSCTFFFEG-------------------FGLSEGLHG 627
D+CTFF +G FGLSEGLHG
Sbjct: 199 DTCTFFLDGIARKIASAGYGVFALDYPGFGLSEGLHG 235
>ref|XP_226249.1| similar to APP-binding protein 1 [Rattus norvegicus]
Length = 308
Score = 36.2 bits (82), Expect = 0.78
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -2
Query: 764 IYIIAPKYILSQVLIQLQFSGLIQALQMDSCTFFFEGFGLSEGLHGL 624
+ +I P Y+LSQV ++ G++Q Q S T F GF LS G+
Sbjct: 9 LLLIVPAYVLSQVALRESCPGILQPSQTLSMTSSFSGFSLSTSAMGI 55
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 771,136,953
Number of Sequences: 1393205
Number of extensions: 16551617
Number of successful extensions: 44441
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 41284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44323
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 55465006400
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
