Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003052A_C01 KMC003052A_c01
(685 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_650744.1| CG7709-PA [Drosophila melanogaster] gi|7300427|... 37 0.25
gb|AAC50771.1| regulator of nonsense transcript stability [Homo ... 37 0.33
gb|AAC51140.1| type 1 RNA helicase pNORF1 37 0.33
ref|NP_002902.2| regulator of nonsense transcripts 1; up-framesh... 37 0.33
sp|Q92900|RNT1_HUMAN Regulator of nonsense transcripts 1 (Nonsen... 37 0.33
>ref|NP_650744.1| CG7709-PA [Drosophila melanogaster] gi|7300427|gb|AAF55584.1|
CG7709-PA [Drosophila melanogaster]
Length = 950
Score = 37.0 bits (84), Expect = 0.25
Identities = 31/106 (29%), Positives = 37/106 (34%), Gaps = 14/106 (13%)
Frame = -1
Query: 673 QSTGLLPEHSNPYMNLPPLPYGVMAPTPTVPSYTGPSTGPYGID---------GVPTGHS 521
QS G P+ P+ P YG P P SY P + YG G P S
Sbjct: 208 QSYGPPPQAKKPHHRRPSSSYGAPRPAPPSQSYGAPPSASYGPPKSAPPSQSYGAPAPPS 267
Query: 520 GNLGEGGSHPNSS----ETLVPSGYYDS-VPAYEGYGLQHYYKTSY 398
G S P+SS PS Y + P YG +SY
Sbjct: 268 SKYGPPKSAPSSSYGAPRPAAPSSSYGAPAPPSSSYGAPAAPSSSY 313
>gb|AAC50771.1| regulator of nonsense transcript stability [Homo sapiens]
Length = 1118
Score = 36.6 bits (83), Expect = 0.33
Identities = 26/87 (29%), Positives = 38/87 (42%), Gaps = 7/87 (8%)
Frame = -1
Query: 634 MNLPPLPYGVMAPTPTVPSYTGPSTGPYGIDGVPTGHSGNLGEGGSH---PNSSETLVPS 464
MN+P +P+ ++ P P Y G + GP G P G +G G + P S+T +P+
Sbjct: 979 MNIP-IPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPN 1037
Query: 463 GYYD----SVPAYEGYGLQHYYKTSYP 395
S P +G Q Y S P
Sbjct: 1038 SQASQDVASQPFSQGALTQGYISMSQP 1064
>gb|AAC51140.1| type 1 RNA helicase pNORF1
Length = 1118
Score = 36.6 bits (83), Expect = 0.33
Identities = 26/87 (29%), Positives = 38/87 (42%), Gaps = 7/87 (8%)
Frame = -1
Query: 634 MNLPPLPYGVMAPTPTVPSYTGPSTGPYGIDGVPTGHSGNLGEGGSH---PNSSETLVPS 464
MN+P +P+ ++ P P Y G + GP G P G +G G + P S+T +P+
Sbjct: 979 MNIP-IPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPN 1037
Query: 463 GYYD----SVPAYEGYGLQHYYKTSYP 395
S P +G Q Y S P
Sbjct: 1038 SQASQDVASQPFSQGALTQGYISMSQP 1064
>ref|NP_002902.2| regulator of nonsense transcripts 1; up-frameshift mutation 1 homolog
(S. cerevisiae); nonsense mRNA reducing factor 1; yeast
Upf1p homolog; delta helicase [Homo sapiens]
gi|2739355|gb|AAB94785.1| pNORF1 [Homo sapiens]
gi|3328175|gb|AAC26788.1| nonsense-mediated mRNA decay
trans-acting factor [Homo sapiens]
gi|24981038|gb|AAH39817.1| regulator of nonsense
transcripts 1 [Homo sapiens]
Length = 1118
Score = 36.6 bits (83), Expect = 0.33
Identities = 26/87 (29%), Positives = 38/87 (42%), Gaps = 7/87 (8%)
Frame = -1
Query: 634 MNLPPLPYGVMAPTPTVPSYTGPSTGPYGIDGVPTGHSGNLGEGGSH---PNSSETLVPS 464
MN+P +P+ ++ P P Y G + GP G P G +G G + P S+T +P+
Sbjct: 979 MNIP-IPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPN 1037
Query: 463 GYYD----SVPAYEGYGLQHYYKTSYP 395
S P +G Q Y S P
Sbjct: 1038 SQASQDVASQPFSQGALTQGYISMSQP 1064
>sp|Q92900|RNT1_HUMAN Regulator of nonsense transcripts 1 (Nonsense mRNA reducing factor 1)
(NORF1) (Up-frameshift suppressor 1 homolog)
Length = 1129
Score = 36.6 bits (83), Expect = 0.33
Identities = 26/87 (29%), Positives = 38/87 (42%), Gaps = 7/87 (8%)
Frame = -1
Query: 634 MNLPPLPYGVMAPTPTVPSYTGPSTGPYGIDGVPTGHSGNLGEGGSH---PNSSETLVPS 464
MN+P +P+ ++ P P Y G + GP G P G +G G + P S+T +P+
Sbjct: 990 MNIP-IPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPN 1048
Query: 463 GYYD----SVPAYEGYGLQHYYKTSYP 395
S P +G Q Y S P
Sbjct: 1049 SQASQDVASQPFSQGALTQGYISMSQP 1075
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 608,884,343
Number of Sequences: 1393205
Number of extensions: 13872451
Number of successful extensions: 46759
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 41747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46321
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
