Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003047A_C01 KMC003047A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC10207.1| putative splicing factor [Cicer arietinum] 213 2e-54
gb|AAO30095.1| splicing factor-like protein [Arabidopsis thaliana] 159 3e-38
ref|NP_568220.1| RRM-containing protein; protein id: At5g09880.1... 159 3e-38
gb|AAM62839.1| putative splicing factor [Arabidopsis thaliana] 152 3e-36
ref|NP_565399.1| RRM-containing protein; protein id: At2g16940.1... 150 9e-36
>emb|CAC10207.1| putative splicing factor [Cicer arietinum]
Length = 392
Score = 213 bits (542), Expect = 2e-54
Identities = 104/114 (91%), Positives = 109/114 (95%), Gaps = 1/114 (0%)
Frame = -3
Query: 601 QVLPAQVL-TPVVEPVGTPSECLLLKNMFDPSTETEPDFDLDIKEDVEEECSKYGRVKHI 425
QVLPAQV+ TPVVEPVG PSECLLLKNMFDPSTETEPDFDLDIKEDVEEECSKYGRVKHI
Sbjct: 278 QVLPAQVMPTPVVEPVGVPSECLLLKNMFDPSTETEPDFDLDIKEDVEEECSKYGRVKHI 337
Query: 424 YVDKRSAGFVYLRFDTVEGASGAQRAMHLRWFARRLISAIFMQPELYEAKFKGE 263
YVDKRSAGFVYLRF+TVE +S AQRAMH+RWFARRLI+AIFMQP LYEAKFKGE
Sbjct: 338 YVDKRSAGFVYLRFETVEASSAAQRAMHMRWFARRLITAIFMQPHLYEAKFKGE 391
>gb|AAO30095.1| splicing factor-like protein [Arabidopsis thaliana]
Length = 527
Score = 159 bits (401), Expect = 3e-38
Identities = 77/111 (69%), Positives = 90/111 (80%), Gaps = 1/111 (0%)
Frame = -3
Query: 598 VLPAQVLTPVV-EPVGTPSECLLLKNMFDPSTETEPDFDLDIKEDVEEECSKYGRVKHIY 422
VLP + V E VG PSECLLLKNMFDP+TETEP+FDL+I++DV +ECSKYG V HIY
Sbjct: 416 VLPTTAIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVADECSKYGPVNHIY 475
Query: 421 VDKRSAGFVYLRFDTVEGASGAQRAMHLRWFARRLISAIFMQPELYEAKFK 269
VDK SAGFVYLRF +VE A+ AQRAMH+RWFA+++ISA FM P YEAK K
Sbjct: 476 VDKNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFMPPHEYEAKAK 526
>ref|NP_568220.1| RRM-containing protein; protein id: At5g09880.1, supported by cDNA:
gi_15451045 [Arabidopsis thaliana]
gi|15451046|gb|AAK96794.1| splicing factor-like protein
[Arabidopsis thaliana]
Length = 527
Score = 159 bits (401), Expect = 3e-38
Identities = 77/111 (69%), Positives = 90/111 (80%), Gaps = 1/111 (0%)
Frame = -3
Query: 598 VLPAQVLTPVV-EPVGTPSECLLLKNMFDPSTETEPDFDLDIKEDVEEECSKYGRVKHIY 422
VLP + V E VG PSECLLLKNMFDP+TETEP+FDL+I++DV +ECSKYG V HIY
Sbjct: 416 VLPTTAIPSFVNEHVGLPSECLLLKNMFDPATETEPNFDLEIRDDVADECSKYGPVNHIY 475
Query: 421 VDKRSAGFVYLRFDTVEGASGAQRAMHLRWFARRLISAIFMQPELYEAKFK 269
VDK SAGFVYLRF +VE A+ AQRAMH+RWFA+++ISA FM P YEAK K
Sbjct: 476 VDKNSAGFVYLRFQSVEAAAAAQRAMHMRWFAQKMISATFMPPHEYEAKAK 526
>gb|AAM62839.1| putative splicing factor [Arabidopsis thaliana]
Length = 560
Score = 152 bits (384), Expect = 3e-36
Identities = 71/111 (63%), Positives = 88/111 (78%)
Frame = -3
Query: 604 GQVLPAQVLTPVVEPVGTPSECLLLKNMFDPSTETEPDFDLDIKEDVEEECSKYGRVKHI 425
G ++P V+ +P+G PSECLLLKNMFDPSTETE DFD DIKEDV+EECSK+G++ HI
Sbjct: 445 GGIIPG-VIPAGFDPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHI 503
Query: 424 YVDKRSAGFVYLRFDTVEGASGAQRAMHLRWFARRLISAIFMQPELYEAKF 272
+VDK S GFVYLRF+ + A GAQRA+H RWFA ++I+A +M E YEAKF
Sbjct: 504 FVDKNSVGFVYLRFENAQAAIGAQRALHGRWFAGKMITATYMTTEAYEAKF 554
>ref|NP_565399.1| RRM-containing protein; protein id: At2g16940.1, supported by cDNA:
16224. [Arabidopsis thaliana] gi|20197280|gb|AAC64224.2|
putative splicing factor [Arabidopsis thaliana]
Length = 561
Score = 150 bits (380), Expect = 9e-36
Identities = 68/98 (69%), Positives = 82/98 (83%)
Frame = -3
Query: 565 EPVGTPSECLLLKNMFDPSTETEPDFDLDIKEDVEEECSKYGRVKHIYVDKRSAGFVYLR 386
+P+G PSECLLLKNMFDPSTETE DFD DIKEDV+EECSK+G++ HI+VDK S GFVYLR
Sbjct: 458 DPIGVPSECLLLKNMFDPSTETEDDFDEDIKEDVKEECSKFGKLNHIFVDKNSVGFVYLR 517
Query: 385 FDTVEGASGAQRAMHLRWFARRLISAIFMQPELYEAKF 272
F+ + A GAQRA+H RWFA ++I+A +M E YEAKF
Sbjct: 518 FENAQAAIGAQRALHGRWFAGKMITATYMTTEAYEAKF 555
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 527,971,821
Number of Sequences: 1393205
Number of extensions: 11390452
Number of successful extensions: 28456
Number of sequences better than 10.0: 176
Number of HSP's better than 10.0 without gapping: 27174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28342
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
