Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003046A_C01 KMC003046A_c01
(653 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566519.1| expressed protein; protein id: At3g15610.1, sup... 171 1e-41
gb|AAD55591.1|AC008016_1 Similar to gb|AJ010025 unr-interacting ... 162 3e-39
ref|NP_563978.1| expressed protein; protein id: At1g15470.1, sup... 155 6e-37
ref|NP_175682.1| unknown protein; protein id: At1g52730.1 [Arabi... 147 2e-34
ref|NP_035629.1| serine/threonine kinase receptor associated pro... 91 2e-17
>ref|NP_566519.1| expressed protein; protein id: At3g15610.1, supported by cDNA:
100072. [Arabidopsis thaliana]
gi|11994333|dbj|BAB02292.1| WD-40 repeat protein-like
[Arabidopsis thaliana] gi|25083282|gb|AAN72058.1|
expressed protein [Arabidopsis thaliana]
gi|28059687|gb|AAO30083.1| Unknown protein [Arabidopsis
thaliana]
Length = 341
Score = 171 bits (432), Expect = 1e-41
Identities = 81/118 (68%), Positives = 93/118 (78%), Gaps = 2/118 (1%)
Frame = -1
Query: 635 YALPCG--SASLEPKYGNKFIAGGEDMWIHVFDFHTGNEIACNKGHHGPVHCVRFSPGGE 462
Y +PC SASLEPK GNKF+AGGEDMW+ +FDFHTG EI CNKGHHGPVHCVRF+P GE
Sbjct: 224 YDMPCNIESASLEPKSGNKFVAGGEDMWVRLFDFHTGKEIGCNKGHHGPVHCVRFAPTGE 283
Query: 461 SYASGSEDGTIRIWQTGPLTHDDESEVLSPEKVKVTADEVSSKIEDFHIAEEAKSKEK 288
SYASGSEDGTIRIWQTGP+ ++ SE K K + DEV+ KIE FHI +E K+ EK
Sbjct: 284 SYASGSEDGTIRIWQTGPVNPEEISE----SKPKQSVDEVARKIEGFHINKEGKTAEK 337
>gb|AAD55591.1|AC008016_1 Similar to gb|AJ010025 unr-interacting protein from Homo sapiens
and contains 3 PF|00400 WD40 domains. EST gb|T45021
comes from this gene. [Arabidopsis thaliana]
Length = 343
Score = 162 bits (411), Expect = 3e-39
Identities = 80/118 (67%), Positives = 92/118 (77%), Gaps = 2/118 (1%)
Frame = -1
Query: 635 YALPCG--SASLEPKYGNKFIAGGEDMWIHVFDFHTGNEIACNKGHHGPVHCVRFSPGGE 462
Y +PC SASLEPK G KF+AGGEDMW+ VFDF+TG EI CNKGHHGPVHCVRF+P G
Sbjct: 224 YDMPCNIESASLEPKSGEKFVAGGEDMWVRVFDFYTGEEIGCNKGHHGPVHCVRFTPTGL 283
Query: 461 SYASGSEDGTIRIWQTGPLTHDDESEVLSPEKVKVTADEVSSKIEDFHIAEEAKSKEK 288
SYASGSEDGTIRIWQT P + +E+E S +VK + DEVS KIE FHI +E K+ EK
Sbjct: 284 SYASGSEDGTIRIWQTTP-ANPEENET-SSRRVKHSVDEVSKKIEGFHINKEGKTAEK 339
>ref|NP_563978.1| expressed protein; protein id: At1g15470.1, supported by cDNA:
113014., supported by cDNA: gi_18389289 [Arabidopsis
thaliana] gi|5103845|gb|AAD39675.1|AC007591_40 Strong
similarity to gb|AF096285 serine-threonine kinase
receptor-associated protein from Mus musculus and
contains 5 PF|00400 WD40, G-beta repeat domains. EST
gb|F14050 comes from this gene. [Arabidopsis thaliana]
gi|21536836|gb|AAM61168.1| Similar to unr-interacting
protein and contains WD40 domains [Arabidopsis thaliana]
gi|24030339|gb|AAN41335.1| unknown protein [Arabidopsis
thaliana]
Length = 333
Score = 155 bits (391), Expect = 6e-37
Identities = 72/113 (63%), Positives = 85/113 (74%), Gaps = 2/113 (1%)
Frame = -1
Query: 635 YALPCG--SASLEPKYGNKFIAGGEDMWIHVFDFHTGNEIACNKGHHGPVHCVRFSPGGE 462
Y +PC SASLEPK+GN FIAGGEDMW+H FDF TG EI CNKGHHGPVHCVR++PGGE
Sbjct: 219 YDMPCNVESASLEPKHGNTFIAGGEDMWVHRFDFQTGEEIGCNKGHHGPVHCVRYAPGGE 278
Query: 461 SYASGSEDGTIRIWQTGPLTHDDESEVLSPEKVKVTADEVSSKIEDFHIAEEA 303
SY SGSEDGT+RIW G + H +ES + VK+ A+EV K E I+E+A
Sbjct: 279 SYTSGSEDGTVRIWVVGSVNHPEESNLSG--HVKLVAEEVVRKAESLRISEKA 329
>ref|NP_175682.1| unknown protein; protein id: At1g52730.1 [Arabidopsis thaliana]
Length = 381
Score = 147 bits (370), Expect = 2e-34
Identities = 80/148 (54%), Positives = 92/148 (62%), Gaps = 32/148 (21%)
Frame = -1
Query: 635 YALPCG--SASLEPKYGNKFIAGGEDMWIHVFDFHTGNEIA------------------- 519
Y +PC SASLEPK G KF+AGGEDMW+ VFDF+TG EI
Sbjct: 232 YDMPCNIESASLEPKSGEKFVAGGEDMWVRVFDFYTGEEIVKFQIASSLIGVSDSVINSM 291
Query: 518 -----------CNKGHHGPVHCVRFSPGGESYASGSEDGTIRIWQTGPLTHDDESEVLSP 372
CNKGHHGPVHCVRF+P G SYASGSEDGTIRIWQT P + +E+E S
Sbjct: 292 SEELNRSLKHGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQTTP-ANPEENET-SS 349
Query: 371 EKVKVTADEVSSKIEDFHIAEEAKSKEK 288
+VK + DEVS KIE FHI +E K+ EK
Sbjct: 350 RRVKHSVDEVSKKIEGFHINKEGKTAEK 377
>ref|NP_035629.1| serine/threonine kinase receptor associated protein [Mus musculus]
gi|10720341|sp|Q9Z1Z2|UNRI_MOUSE UNR-interacting protein
(Serine-threonine kinase receptor-associated protein)
gi|4063383|gb|AAC98300.1| serine-threonine kinase
receptor-associated protein [Mus musculus]
Length = 351
Score = 90.5 bits (223), Expect = 2e-17
Identities = 50/123 (40%), Positives = 71/123 (57%), Gaps = 10/123 (8%)
Frame = -1
Query: 617 SASLEPKYGNKFIAGGEDMWIHVFDFHTGNEIACNKGHHGPVHCVRFSPGGESYASGSED 438
SASL P+ +AGGED ++ +D+++G E+ KGH GP+HCVRFSP GE YASGSED
Sbjct: 228 SASLHPEK-EFLVAGGEDFKLYKYDYNSGEELESYKGHFGPIHCVRFSPDGELYASGSED 286
Query: 437 GTIRIWQT----------GPLTHDDESEVLSPEKVKVTADEVSSKIEDFHIAEEAKSKEK 288
GT+R+WQT L +D E+ P K+ E + + +AEE S+
Sbjct: 287 GTLRLWQTVVGKTYGLWKCVLPEEDSGELAKP---KIGFPETAEE----ELAEEIASENS 339
Query: 287 EEV 279
+ +
Sbjct: 340 DSI 342
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 595,814,909
Number of Sequences: 1393205
Number of extensions: 13636064
Number of successful extensions: 58294
Number of sequences better than 10.0: 1706
Number of HSP's better than 10.0 without gapping: 50472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57805
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
