Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003045A_C01 KMC003045A_c01
(468 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565048.1| mitochondrial carrier protein family; protein i... 145 2e-34
pir||T01839 hypothetical protein F9D12.12 - Arabidopsis thaliana... 127 4e-29
ref|NP_197992.1| mitochondrial carrier protein family; protein i... 127 4e-29
gb|AAM65995.1| mitochondrial carrier-like protein [Arabidopsis t... 126 1e-28
gb|AAM01130.1|AC108884_12 Putative Tricarboxylate transport prot... 113 9e-25
>ref|NP_565048.1| mitochondrial carrier protein family; protein id: At1g72820.1,
supported by cDNA: gi_20465266 [Arabidopsis thaliana]
gi|25406215|pir||B96753 hypothetical protein F3N23.2
[imported] - Arabidopsis thaliana
gi|5903071|gb|AAD55629.1|AC008017_2 Unknown protein
[Arabidopsis thaliana] gi|20465267|gb|AAM19953.1|
At1g72820/F3N23_2 [Arabidopsis thaliana]
gi|23308305|gb|AAN18122.1| At1g72820/F3N23_2
[Arabidopsis thaliana]
Length = 349
Score = 145 bits (366), Expect = 2e-34
Identities = 73/86 (84%), Positives = 79/86 (90%), Gaps = 3/86 (3%)
Frame = -1
Query: 468 GGMSALITMPLDTIKTRLQVLDGDE---NGRRGPTIMQTVRNLVKEGGWTACYRGLGPRW 298
G +SALITMPLDTIKTRLQVLDG++ NG+RGP+I QTVRNLV+EGGWTACYRGLGPR
Sbjct: 258 GSVSALITMPLDTIKTRLQVLDGEDSSNNGKRGPSIGQTVRNLVREGGWTACYRGLGPRC 317
Query: 297 ASMSMSATTMITTYEFLKRLSAKNQD 220
ASMSMSATTMITTYEFLKRLSAKN D
Sbjct: 318 ASMSMSATTMITTYEFLKRLSAKNHD 343
>pir||T01839 hypothetical protein F9D12.12 - Arabidopsis thaliana
gi|3319342|gb|AAC26231.1| similar to mitochondrial
carrier proteins (Pfam: mit_carr.hmm, score: 79.74 and
42.50) [Arabidopsis thaliana]
Length = 336
Score = 127 bits (320), Expect = 4e-29
Identities = 63/82 (76%), Positives = 72/82 (86%), Gaps = 1/82 (1%)
Frame = -1
Query: 465 GMSALITMPLDTIKTRLQVLDGDENGRR-GPTIMQTVRNLVKEGGWTACYRGLGPRWASM 289
G SAL+TMP+DTIKTRLQVLD +ENGRR T+MQ+V++L+KEGG ACYRGLGPRW SM
Sbjct: 254 GCSALVTMPVDTIKTRLQVLDAEENGRRRAMTVMQSVKSLMKEGGVGACYRGLGPRWVSM 313
Query: 288 SMSATTMITTYEFLKRLSAKNQ 223
SMSATTMITTYEFLKRL+ K Q
Sbjct: 314 SMSATTMITTYEFLKRLATKKQ 335
>ref|NP_197992.1| mitochondrial carrier protein family; protein id: At5g26200.1,
supported by cDNA: 6836., supported by cDNA: gi_16604514
[Arabidopsis thaliana] gi|16604515|gb|AAL24263.1|
AT5g26200/T19G15_50 [Arabidopsis thaliana]
gi|23308179|gb|AAN18059.1| At5g26200/T19G15_50
[Arabidopsis thaliana]
Length = 342
Score = 127 bits (320), Expect = 4e-29
Identities = 63/82 (76%), Positives = 72/82 (86%), Gaps = 1/82 (1%)
Frame = -1
Query: 465 GMSALITMPLDTIKTRLQVLDGDENGRR-GPTIMQTVRNLVKEGGWTACYRGLGPRWASM 289
G SAL+TMP+DTIKTRLQVLD +ENGRR T+MQ+V++L+KEGG ACYRGLGPRW SM
Sbjct: 260 GCSALVTMPVDTIKTRLQVLDAEENGRRRAMTVMQSVKSLMKEGGVGACYRGLGPRWVSM 319
Query: 288 SMSATTMITTYEFLKRLSAKNQ 223
SMSATTMITTYEFLKRL+ K Q
Sbjct: 320 SMSATTMITTYEFLKRLATKKQ 341
>gb|AAM65995.1| mitochondrial carrier-like protein [Arabidopsis thaliana]
Length = 342
Score = 126 bits (317), Expect = 1e-28
Identities = 62/82 (75%), Positives = 72/82 (87%), Gaps = 1/82 (1%)
Frame = -1
Query: 465 GMSALITMPLDTIKTRLQVLDGDENGRR-GPTIMQTVRNLVKEGGWTACYRGLGPRWASM 289
G SAL+TMP+DTIKTRLQVLD +ENGRR T+MQ+V++L+KEGG ACYRGLGPRW +M
Sbjct: 260 GCSALVTMPVDTIKTRLQVLDAEENGRRRAMTVMQSVKSLMKEGGVGACYRGLGPRWVAM 319
Query: 288 SMSATTMITTYEFLKRLSAKNQ 223
SMSATTMITTYEFLKRL+ K Q
Sbjct: 320 SMSATTMITTYEFLKRLATKKQ 341
>gb|AAM01130.1|AC108884_12 Putative Tricarboxylate transport protein, mitochondrial precursor
[Oryza sativa (japonica cultivar-group)]
Length = 330
Score = 113 bits (283), Expect = 9e-25
Identities = 54/81 (66%), Positives = 64/81 (78%)
Frame = -1
Query: 468 GGMSALITMPLDTIKTRLQVLDGDENGRRGPTIMQTVRNLVKEGGWTACYRGLGPRWASM 289
GG +AL+TMPLDT+KTRLQV+DG G ++ R LV+EGGW ACYRGLGPRWASM
Sbjct: 252 GGAAALVTMPLDTVKTRLQVMDGG-----GASLASEARALVREGGWGACYRGLGPRWASM 306
Query: 288 SMSATTMITTYEFLKRLSAKN 226
S+SA TM+T YEFLKRLS K+
Sbjct: 307 SLSAATMVTAYEFLKRLSTKD 327
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 419,252,766
Number of Sequences: 1393205
Number of extensions: 9151034
Number of successful extensions: 31396
Number of sequences better than 10.0: 527
Number of HSP's better than 10.0 without gapping: 28682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31053
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 12232797444
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
