Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003042A_C01 KMC003042A_c01
(855 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG08959.1|AF122051_1 tuber-specific and sucrose-responsive e... 309 4e-83
dbj|BAC53938.1| Myb-like protein [Nicotiana tabacum] 303 3e-81
ref|NP_201531.1| myb family transcription factor; protein id: At... 290 2e-77
gb|AAK96490.1| AT5g67300/K8K14_2 [Arabidopsis thaliana] gi|16974... 290 2e-77
gb|AAM64847.1| myb-related protein, 33.3K [Arabidopsis thaliana] 288 9e-77
>gb|AAG08959.1|AF122051_1 tuber-specific and sucrose-responsive element binding factor
[Solanum tuberosum]
Length = 364
Score = 309 bits (791), Expect = 4e-83
Identities = 178/299 (59%), Positives = 204/299 (67%), Gaps = 34/299 (11%)
Frame = +1
Query: 61 MDRIKGPWSPEEDEALQRLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAF 240
MDR+KGPWSPEEDE LQ+LV+KHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAF
Sbjct: 1 MDRVKGPWSPEEDELLQQLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAF 60
Query: 241 TAEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASFMMDDHN----- 405
T EED+TIIRAHARFGNKWATIARLL+GRTDNAIKNHWNSTLKRKC+S D+ N
Sbjct: 61 TPEEDETIIRAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRKCSSLSADEGNELADQ 120
Query: 406 -----APPLKRSVSAGAATPVSTGLYMNPPSPGSPSGSDVSESSVPVCTPSAAAAAHVFR 570
PPLKRSVSAG+A PVS G + SPGSPSGSD S+SS+ V ++++ +HVF+
Sbjct: 121 IFENQQPPLKRSVSAGSAMPVS-GFHF---SPGSPSGSD-SDSSLHV---TSSSQSHVFK 172
Query: 571 PVPRTGGVLP-PVETTSSSNDPPTSLSLSLPGVD--STSEETAPAPAQPPSAIPLLPIMA 741
PV RTGGV P ++ +S DPPTSLSLSLPGVD S +A + LLP M
Sbjct: 173 PVARTGGVFPQSIDISSPPVDPPTSLSLSLPGVDLAEFSNRSADSTQSKNPFQLLLPPMQ 232
Query: 742 APVQLVVPPQPQVQ------DPSTAVMQKVSGP---------------FNFSAELLGVM 855
P PP P Q + +A+ Q + P FS ELLGVM
Sbjct: 233 IPPPPPPPPPPPPQATTVPFERVSAIQQSLQNPDFGKNAGGEQPDKVFVPFSQELLGVM 291
>dbj|BAC53938.1| Myb-like protein [Nicotiana tabacum]
Length = 329
Score = 303 bits (775), Expect = 3e-81
Identities = 173/295 (58%), Positives = 196/295 (65%), Gaps = 24/295 (8%)
Frame = +1
Query: 43 NTSITKMDRIKGPWSPEEDEALQRLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQ 222
NT + DRIKGPWSPEEDE LQ LVEKHGPRNWSLISKS+PGRSGKSCRLRWCNQLSPQ
Sbjct: 4 NTQRKESDRIKGPWSPEEDELLQSLVEKHGPRNWSLISKSVPGRSGKSCRLRWCNQLSPQ 63
Query: 223 VEHRAFTAEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASFMMD-- 396
VEHRAFT+EED+TIIRAHA+FGNKWATIARLLSGRTDNAIKNHWNSTLKRKC S D
Sbjct: 64 VEHRAFTSEEDETIIRAHAKFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCCSMSEDLS 123
Query: 397 -DHNAPPLKRSVSAGAATPVSTGLYMNPPSPGSPSGSDVSESSVPVCTPSAAAAAHVFRP 573
+ PLKRS S G +T S+G+ +PGSPSGSD+S+SS+ S + V+RP
Sbjct: 124 FETPQQPLKRSSSVGPSTNFSSGM-----NPGSPSGSDLSDSSL-----SGFPQSLVYRP 173
Query: 574 VPRTGGVLP------PVETTSSSNDPPTSLSLSLP--GVDSTSEETAPAP--AQPPSAIP 723
VPRTGG+ P P+ET DPPTSL LSLP G TS +TA QPP + P
Sbjct: 174 VPRTGGIFPLPPLVQPIETAPFIPDPPTSLCLSLPGSGTRETSIQTAQPTQLTQPPQSPP 233
Query: 724 LLPIMAAPVQLVVPPQPQV---QDPST--------AVMQKVSGPFNFSAELLGVM 855
P+ PV VPP V Q P T + K F+ E LGV+
Sbjct: 234 PPPLALPPVDKPVPPPTAVFMSQLPQTKQSYDFCVPALPKSGEKQFFTPEFLGVL 288
>ref|NP_201531.1| myb family transcription factor; protein id: At5g67300.1, supported
by cDNA: 33763., supported by cDNA: gi_11908059,
supported by cDNA: gi_12642875, supported by cDNA:
gi_15450392, supported by cDNA: gi_16974492 [Arabidopsis
thaliana] gi|9758429|dbj|BAB09015.1| myb-related
protein, 33.3K [Arabidopsis thaliana]
gi|11908060|gb|AAG41459.1|AF326877_1 putative
myb-related protein, 33.3K [Arabidopsis thaliana]
gi|12642876|gb|AAK00380.1|AF339698_1 putative
myb-related protein, 33.3K [Arabidopsis thaliana]
Length = 305
Score = 290 bits (741), Expect = 2e-77
Identities = 152/214 (71%), Positives = 173/214 (80%), Gaps = 8/214 (3%)
Frame = +1
Query: 64 DRIKGPWSPEEDEALQRLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFT 243
DRIKGPWSPEEDE L+RLV K+GPRNW++ISKSIPGRSGKSCRLRWCNQLSPQVEHR F+
Sbjct: 3 DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62
Query: 244 AEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASF------MMDDHN 405
AEED+TI RAHA+FGNKWATIARLL+GRTDNA+KNHWNSTLKRKC + +DH
Sbjct: 63 AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCGGYDHRGYDGSEDHR 122
Query: 406 APPLKRSVSAGAATPVSTGLYMNPPSPGSPSGSDVSESSVPVCTPSAAAAAHVFRPVPRT 585
P+KRSVSAG + PV TGLYM SPGSP+GSDVS+SS PS +F+PVPR
Sbjct: 123 --PVKRSVSAG-SPPVVTGLYM---SPGSPTGSDVSDSSTIPILPS----VELFKPVPRP 172
Query: 586 GG-VLP-PVETTSSSNDPPTSLSLSLPGVDSTSE 681
G VLP P+ET+SSS+DPPTSLSLSLPG D + E
Sbjct: 173 GAVVLPLPIETSSSSDDPPTSLSLSLPGADVSEE 206
>gb|AAK96490.1| AT5g67300/K8K14_2 [Arabidopsis thaliana] gi|16974493|gb|AAL31250.1|
AT5g67300/K8K14_2 [Arabidopsis thaliana]
Length = 305
Score = 290 bits (741), Expect = 2e-77
Identities = 152/214 (71%), Positives = 173/214 (80%), Gaps = 8/214 (3%)
Frame = +1
Query: 64 DRIKGPWSPEEDEALQRLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFT 243
DRIKGPWSPEEDE L+RLV K+GPRNW++ISKSIPGRSGKSCRLRWCNQLSPQVEHR F+
Sbjct: 3 DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62
Query: 244 AEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASF------MMDDHN 405
AEED+TI RAHA+FGNKWATIARLL+GRTDNA+KNHWNSTLKRKC + +DH
Sbjct: 63 AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCGGYDHRGYDGSEDHR 122
Query: 406 APPLKRSVSAGAATPVSTGLYMNPPSPGSPSGSDVSESSVPVCTPSAAAAAHVFRPVPRT 585
P+KRSVSAG + PV TGLYM SPGSP+GSDVS+SS PS +F+PVPR
Sbjct: 123 --PVKRSVSAG-SPPVVTGLYM---SPGSPTGSDVSDSSTIPILPS----VELFKPVPRP 172
Query: 586 GG-VLP-PVETTSSSNDPPTSLSLSLPGVDSTSE 681
G VLP P+ET+SSS+DPPTSLSLSLPG D + E
Sbjct: 173 GAVVLPLPIETSSSSDDPPTSLSLSLPGADVSEE 206
>gb|AAM64847.1| myb-related protein, 33.3K [Arabidopsis thaliana]
Length = 305
Score = 288 bits (736), Expect = 9e-77
Identities = 151/214 (70%), Positives = 172/214 (79%), Gaps = 8/214 (3%)
Frame = +1
Query: 64 DRIKGPWSPEEDEALQRLVEKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFT 243
DRIKGPWSPEEDE L+RLV K+GPRNW++ISKSIPGRSGKSCRLRWCNQLSPQVEHR F+
Sbjct: 3 DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62
Query: 244 AEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASF------MMDDHN 405
AEED+TI RAHA+FGNKWATIARLL+GRTDNA+KNHWNSTLKRKC + +DH
Sbjct: 63 AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCGGYDHRGYDGSEDHR 122
Query: 406 APPLKRSVSAGAATPVSTGLYMNPPSPGSPSGSDVSESSVPVCTPSAAAAAHVFRPVPRT 585
P+KRSVSAG + PV TGLYM SPGSP+GSDVS+SS PS +F+PVPR
Sbjct: 123 --PVKRSVSAG-SPPVVTGLYM---SPGSPTGSDVSDSSTIPILPS----VELFKPVPRP 172
Query: 586 GG-VLP-PVETTSSSNDPPTSLSLSLPGVDSTSE 681
G VLP P+ET+SSS+DPP SLSLSLPG D + E
Sbjct: 173 GAXVLPXPIETSSSSDDPPXSLSLSLPGADVSEE 206
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.312 0.128 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 948,765,710
Number of Sequences: 1393205
Number of extensions: 29142934
Number of successful extensions: 232834
Number of sequences better than 10.0: 3427
Number of HSP's better than 10.0 without gapping: 102100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 193397
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 45152354394
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
