Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003037A_C01 KMC003037A_c01
(570 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188147.1| putative 3-hydroxybutyryl-CoA dehydrogenase; pr... 236 1e-61
dbj|BAB89894.1| putative 3-hydroxybutyryl-CoA dehydrogenase [Ory... 228 4e-59
gb|ZP_00080009.1| hypothetical protein [Geobacter metallireducens] 182 3e-45
ref|NP_386751.1| PROBABLE 3-HYDROXYBUTYRYL-COA DEHYDROGENASE PRO... 179 2e-44
ref|NP_104581.1| 3-hydroxybutyryl-CoA dehydrogenase [Mesorhizobi... 179 2e-44
>ref|NP_188147.1| putative 3-hydroxybutyryl-CoA dehydrogenase; protein id:
At3g15290.1 [Arabidopsis thaliana]
gi|9294256|dbj|BAB02158.1| 3-hydroxybutyryl-CoA
dehydrogenase-like protein [Arabidopsis thaliana]
gi|23306408|gb|AAN17431.1| putative 3-hydroxybutyryl-CoA
dehydrogenase [Arabidopsis thaliana]
gi|24899761|gb|AAN65095.1| putative 3-hydroxybutyryl-CoA
dehydrogenase [Arabidopsis thaliana]
Length = 294
Score = 236 bits (603), Expect = 1e-61
Identities = 111/136 (81%), Positives = 125/136 (91%)
Frame = -3
Query: 568 VRGADTSDETFAATKALSERLGKTVITSQDYSGFIVNRILMPMINEAFFTLYTGVATKED 389
+RGADTS+ETF ATK L+ER GKT + SQDY+GF+VNRILMPMINEAF TLYTGVATKED
Sbjct: 155 IRGADTSEETFLATKVLAERFGKTTVCSQDYAGFVVNRILMPMINEAFHTLYTGVATKED 214
Query: 388 IDTGMKLGTNHPMGPLELADFIGLDVCLSIMKVLHAGLGDNKYAPCPLLVQYVDAGRLGR 209
ID+GMK GTNHPMGPLELAD IGLDVCLS+MKVLH GLGD+KYAPCPLLVQYVDAGRLGR
Sbjct: 215 IDSGMKHGTNHPMGPLELADLIGLDVCLSVMKVLHEGLGDSKYAPCPLLVQYVDAGRLGR 274
Query: 208 KRGIGVYDYLKSSSRL 161
KRG+GVYDY +++ +L
Sbjct: 275 KRGVGVYDYREATQKL 290
>dbj|BAB89894.1| putative 3-hydroxybutyryl-CoA dehydrogenase [Oryza sativa (japonica
cultivar-group)]
Length = 302
Score = 228 bits (581), Expect = 4e-59
Identities = 109/136 (80%), Positives = 121/136 (88%)
Frame = -3
Query: 568 VRGADTSDETFAATKALSERLGKTVITSQDYSGFIVNRILMPMINEAFFTLYTGVATKED 389
+RGADTS+E F K+ SERLGKTVI SQDY GFIVNRILMPMINEAF+ LYTGVATKED
Sbjct: 161 IRGADTSEEVFTKVKSFSERLGKTVICSQDYPGFIVNRILMPMINEAFWALYTGVATKED 220
Query: 388 IDTGMKLGTNHPMGPLELADFIGLDVCLSIMKVLHAGLGDNKYAPCPLLVQYVDAGRLGR 209
IDTGMKLGTNHPMGPL+LADFIGLDVCLS+++VLH GLGD+KY+PCPLLVQYVDAGRLG+
Sbjct: 221 IDTGMKLGTNHPMGPLQLADFIGLDVCLSVLRVLHNGLGDSKYSPCPLLVQYVDAGRLGK 280
Query: 208 KRGIGVYDYLKSSSRL 161
KRG GVY Y SS +
Sbjct: 281 KRGQGVYSYRTRSSSI 296
>gb|ZP_00080009.1| hypothetical protein [Geobacter metallireducens]
Length = 281
Score = 182 bits (461), Expect = 3e-45
Identities = 90/129 (69%), Positives = 99/129 (75%)
Frame = -3
Query: 568 VRGADTSDETFAATKALSERLGKTVITSQDYSGFIVNRILMPMINEAFFTLYTGVATKED 389
+RG TSDETFAAT AL +LGK S DY GFIVNRIL+PMINEA F L+ G+AT ED
Sbjct: 153 IRGLTTSDETFAATTALVAKLGKETAVSADYPGFIVNRILIPMINEAAFALFEGIATVED 212
Query: 388 IDTGMKLGTNHPMGPLELADFIGLDVCLSIMKVLHAGLGDNKYAPCPLLVQYVDAGRLGR 209
ID GMKLGTN PMGPL LADFIGLD CL+IM VLH G D+KY PCPLLV+ V+AG LGR
Sbjct: 213 IDKGMKLGTNQPMGPLTLADFIGLDTCLAIMNVLHEGFKDSKYRPCPLLVKMVEAGYLGR 272
Query: 208 KRGIGVYDY 182
K G G Y Y
Sbjct: 273 KTGRGFYTY 281
>ref|NP_386751.1| PROBABLE 3-HYDROXYBUTYRYL-COA DEHYDROGENASE PROTEIN [Sinorhizobium
meliloti] gi|15075669|emb|CAC47224.1| PROBABLE
3-HYDROXYBUTYRYL-COA DEHYDROGENASE PROTEIN
[Sinorhizobium meliloti]
Length = 290
Score = 179 bits (455), Expect = 2e-44
Identities = 87/129 (67%), Positives = 99/129 (76%)
Frame = -3
Query: 568 VRGADTSDETFAATKALSERLGKTVITSQDYSGFIVNRILMPMINEAFFTLYTGVATKED 389
VRG T +ETF A K L KTV ++D+ FIVNRIL+PMINEA +TLY GV T +
Sbjct: 153 VRGIATEEETFKAAKEFVAHLDKTVTVAEDFPAFIVNRILLPMINEAIYTLYEGVGTVDA 212
Query: 388 IDTGMKLGTNHPMGPLELADFIGLDVCLSIMKVLHAGLGDNKYAPCPLLVQYVDAGRLGR 209
IDT MKLG NHPMGPL+LADFIGLD CLSIM+VLH GL D+KY PCPLLV+YV+AG LGR
Sbjct: 213 IDTAMKLGANHPMGPLQLADFIGLDTCLSIMQVLHDGLADSKYRPCPLLVKYVEAGWLGR 272
Query: 208 KRGIGVYDY 182
K G G YDY
Sbjct: 273 KSGRGFYDY 281
>ref|NP_104581.1| 3-hydroxybutyryl-CoA dehydrogenase [Mesorhizobium loti]
gi|14023762|dbj|BAB50367.1| 3-hydroxybutyryl-CoA
dehydrogenase [Mesorhizobium loti]
Length = 292
Score = 179 bits (454), Expect = 2e-44
Identities = 85/129 (65%), Positives = 101/129 (77%)
Frame = -3
Query: 568 VRGADTSDETFAATKALSERLGKTVITSQDYSGFIVNRILMPMINEAFFTLYTGVATKED 389
VRG T D+TF A K ++L KT+ S+D+ FIVNRIL+PMINEA +TLY GV + +
Sbjct: 155 VRGIATEDQTFEAAKTYVKQLDKTITVSEDFPAFIVNRILLPMINEAIYTLYEGVGSVDA 214
Query: 388 IDTGMKLGTNHPMGPLELADFIGLDVCLSIMKVLHAGLGDNKYAPCPLLVQYVDAGRLGR 209
IDT M+LG NHPMGPL+LADFIGLD CLSIM+VLH GL D+KY PCPLLV+YV+AG LGR
Sbjct: 215 IDTAMRLGANHPMGPLQLADFIGLDTCLSIMQVLHDGLSDSKYRPCPLLVKYVEAGWLGR 274
Query: 208 KRGIGVYDY 182
K G G YDY
Sbjct: 275 KTGRGFYDY 283
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,552,630
Number of Sequences: 1393205
Number of extensions: 10544591
Number of successful extensions: 25985
Number of sequences better than 10.0: 372
Number of HSP's better than 10.0 without gapping: 25102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25697
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20956655091
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
