Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003036A_C01 KMC003036A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC10706.1| P0431H09.18 [Oryza sativa (japonica cultivar-gro... 97 2e-19
emb|CAA71879.1| hypothetical protein 194 [Arabidopsis thaliana] 95 7e-19
ref|NP_172944.1| unknown protein; protein id: At1g14910.1 [Arabi... 95 7e-19
pir||T52617 hypothetical protein [imported] - Arabidopsis thalia... 95 7e-19
pir||G86282 protein F10B6.32 [imported] - Arabidopsis thaliana g... 95 7e-19
>dbj|BAC10706.1| P0431H09.18 [Oryza sativa (japonica cultivar-group)]
Length = 541
Score = 96.7 bits (239), Expect = 2e-19
Identities = 57/119 (47%), Positives = 70/119 (57%), Gaps = 10/119 (8%)
Frame = -3
Query: 574 LYDEGAYRAA--RQPVYGVPSAPNPFEVQDPFAVSSSIAPPAAVQMAAMQQQ-------- 425
LYDEG YR +Q +YG +APNPF DPFA+S+ +APP +VQMA+M QQ
Sbjct: 433 LYDEGTYRQQMQQQQLYG-SAAPNPFMASDPFAMSNQVAPPPSVQMASMTQQPQQMPMMM 491
Query: 424 EANPFGPYHQPFHPQQQQQHMLMNPANPFADGGFGAFPANSISHPQNNNNNPFGSTGLL 248
+ NPFGP P Q Q + NPF D GFG FPA++ HPQ NPFG+ LL
Sbjct: 492 QPNPFGP------PLQPQHAGIAQAPNPFLDAGFGPFPASNGMHPQ---ANPFGTAQLL 541
>emb|CAA71879.1| hypothetical protein 194 [Arabidopsis thaliana]
Length = 584
Score = 94.7 bits (234), Expect = 7e-19
Identities = 52/102 (50%), Positives = 65/102 (62%), Gaps = 2/102 (1%)
Frame = -3
Query: 574 LYDEGAYRAARQPVYGVPSAPNPFEVQDPFAVSSSIAPPAAVQMAAMQQQEANPFGPYHQ 395
LYD+GA RAA+QP YGVP A NPFEVQD FA S S++PP+AV NPFG Y
Sbjct: 351 LYDDGALRAAQQPAYGVP-ASNPFEVQDLFAFSDSVSPPSAVN---------NPFGLYEP 400
Query: 394 PFHPQQQQQHMLM--NPANPFADGGFGAFPANSISHPQNNNN 275
+H Q+QQ + + +PANPF D FG FP +S PQ+ +
Sbjct: 401 TYHQQEQQPQLQVAPSPANPFGD--FGEFPIVPVSEPQSTTS 440
Score = 46.2 bits (108), Expect = 3e-04
Identities = 28/80 (35%), Positives = 38/80 (47%)
Frame = -3
Query: 487 FAVSSSIAPPAAVQMAAMQQQEANPFGPYHQPFHPQQQQQHMLMNPANPFADGGFGAFPA 308
F V S AP A+ P P +P + ++ + P GFG FP
Sbjct: 511 FPVVSVSAPQNTTGFGAL------PVIPVSEPSKTTGLGEFPVVPVSEPQNTTGFGEFPV 564
Query: 307 NSISHPQNNNNNPFGSTGLL 248
N+ +H Q+N+NNPFGSTG L
Sbjct: 565 NAGAHEQHNSNNPFGSTGFL 584
>ref|NP_172944.1| unknown protein; protein id: At1g14910.1 [Arabidopsis thaliana]
gi|20465421|gb|AAM20134.1| unknown protein [Arabidopsis
thaliana]
Length = 692
Score = 94.7 bits (234), Expect = 7e-19
Identities = 52/102 (50%), Positives = 65/102 (62%), Gaps = 2/102 (1%)
Frame = -3
Query: 574 LYDEGAYRAARQPVYGVPSAPNPFEVQDPFAVSSSIAPPAAVQMAAMQQQEANPFGPYHQ 395
LYD+GA RAA+QP YGVP A NPFEVQD FA S S++PP+AV NPFG Y
Sbjct: 459 LYDDGALRAAQQPAYGVP-ASNPFEVQDLFAFSDSVSPPSAVN---------NPFGLYEP 508
Query: 394 PFHPQQQQQHMLM--NPANPFADGGFGAFPANSISHPQNNNN 275
+H Q+QQ + + +PANPF D FG FP +S PQ+ +
Sbjct: 509 TYHQQEQQPQLQVAPSPANPFGD--FGEFPIVPVSEPQSTTS 548
Score = 46.2 bits (108), Expect = 3e-04
Identities = 28/80 (35%), Positives = 38/80 (47%)
Frame = -3
Query: 487 FAVSSSIAPPAAVQMAAMQQQEANPFGPYHQPFHPQQQQQHMLMNPANPFADGGFGAFPA 308
F V S AP A+ P P +P + ++ + P GFG FP
Sbjct: 619 FPVVSVSAPQNTTGFGAL------PVIPVSEPSKTTGLGEFPVVPVSEPQNTTGFGEFPV 672
Query: 307 NSISHPQNNNNNPFGSTGLL 248
N+ +H Q+N+NNPFGSTG L
Sbjct: 673 NAGAHEQHNSNNPFGSTGFL 692
>pir||T52617 hypothetical protein [imported] - Arabidopsis thaliana (fragment)
gi|1813887|emb|CAA71818.1| hypothetical protein
(cDNA194) [Arabidopsis thaliana]
gi|1834355|emb|CAA71880.1| hypothetical protein 194
[Arabidopsis thaliana]
Length = 413
Score = 94.7 bits (234), Expect = 7e-19
Identities = 52/102 (50%), Positives = 65/102 (62%), Gaps = 2/102 (1%)
Frame = -3
Query: 574 LYDEGAYRAARQPVYGVPSAPNPFEVQDPFAVSSSIAPPAAVQMAAMQQQEANPFGPYHQ 395
LYD+GA RAA+QP YGVP A NPFEVQD FA S S++PP+AV NPFG Y
Sbjct: 180 LYDDGALRAAQQPAYGVP-ASNPFEVQDLFAFSDSVSPPSAVN---------NPFGLYEP 229
Query: 394 PFHPQQQQQHMLM--NPANPFADGGFGAFPANSISHPQNNNN 275
+H Q+QQ + + +PANPF D FG FP +S PQ+ +
Sbjct: 230 TYHQQEQQPQLQVAPSPANPFGD--FGEFPIVPVSEPQSTTS 269
Score = 46.2 bits (108), Expect = 3e-04
Identities = 28/80 (35%), Positives = 38/80 (47%)
Frame = -3
Query: 487 FAVSSSIAPPAAVQMAAMQQQEANPFGPYHQPFHPQQQQQHMLMNPANPFADGGFGAFPA 308
F V S AP A+ P P +P + ++ + P GFG FP
Sbjct: 340 FPVVSVSAPQNTTGFGAL------PVIPVSEPSKTTGLGEFPVVPVSEPQNTTGFGEFPV 393
Query: 307 NSISHPQNNNNNPFGSTGLL 248
N+ +H Q+N+NNPFGSTG L
Sbjct: 394 NAGAHEQHNSNNPFGSTGFL 413
>pir||G86282 protein F10B6.32 [imported] - Arabidopsis thaliana
gi|8778222|gb|AAF79231.1|AC006917_16 F10B6.32
[Arabidopsis thaliana]
Length = 813
Score = 94.7 bits (234), Expect = 7e-19
Identities = 52/102 (50%), Positives = 65/102 (62%), Gaps = 2/102 (1%)
Frame = -3
Query: 574 LYDEGAYRAARQPVYGVPSAPNPFEVQDPFAVSSSIAPPAAVQMAAMQQQEANPFGPYHQ 395
LYD+GA RAA+QP YGVP A NPFEVQD FA S S++PP+AV NPFG Y
Sbjct: 580 LYDDGALRAAQQPAYGVP-ASNPFEVQDLFAFSDSVSPPSAVN---------NPFGLYEP 629
Query: 394 PFHPQQQQQHMLM--NPANPFADGGFGAFPANSISHPQNNNN 275
+H Q+QQ + + +PANPF D FG FP +S PQ+ +
Sbjct: 630 TYHQQEQQPQLQVAPSPANPFGD--FGEFPIVPVSEPQSTTS 669
Score = 46.2 bits (108), Expect = 3e-04
Identities = 28/80 (35%), Positives = 38/80 (47%)
Frame = -3
Query: 487 FAVSSSIAPPAAVQMAAMQQQEANPFGPYHQPFHPQQQQQHMLMNPANPFADGGFGAFPA 308
F V S AP A+ P P +P + ++ + P GFG FP
Sbjct: 740 FPVVSVSAPQNTTGFGAL------PVIPVSEPSKTTGLGEFPVVPVSEPQNTTGFGEFPV 793
Query: 307 NSISHPQNNNNNPFGSTGLL 248
N+ +H Q+N+NNPFGSTG L
Sbjct: 794 NAGAHEQHNSNNPFGSTGFL 813
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 570,323,524
Number of Sequences: 1393205
Number of extensions: 13708080
Number of successful extensions: 48599
Number of sequences better than 10.0: 200
Number of HSP's better than 10.0 without gapping: 40398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47061
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
