Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003035A_C01 KMC003035A_c01
(611 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD09104.1| fertilization-independent seed 2 protein [Arabido... 44 0.002
ref|NP_565815.1| fertilization-independent seed 2 protein; prote... 37 0.16
gb|AAH36187.1| Similar to serine/arginine repetitive matrix 1 [H... 36 0.45
ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-... 35 1.0
gb|AAF35326.1|AF222909_2 unknown [Candida albicans] 34 1.3
>gb|AAD09104.1| fertilization-independent seed 2 protein [Arabidopsis thaliana]
gi|4185501|gb|AAD09105.1| fertilization-independent seed
2 protein [Arabidopsis thaliana]
Length = 692
Score = 43.5 bits (101), Expect = 0.002
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 14/133 (10%)
Frame = +2
Query: 98 NTGTVTRGNESRKNKSA------LQQPPKHHKTSKQPNIYPKRIDPI*NDDSIKPSKLKN 259
N + R + S+KNKS + PPK + K NI + +I S+ K
Sbjct: 404 NVSSTPRAHSSKKNKSTRKNDDNIPSPPKTRSSKKTSNILTR------TQPAIAESEPKV 457
Query: 260 LHQNTQFIELIPGAYIKQQTEK*IKR--------KTRHNEKPTEITTSKQASPTQPSDHL 415
H N + P A+ ++ + K+ KTR ++K ++I + Q + +PS+
Sbjct: 458 PHVNDDKVSSTPRAHSSKKNKSTHKKDDNASLPPKTRSSKKTSDILATTQPAKAEPSEPK 517
Query: 416 LNNVSMEKTLRPE 454
+ VS K L E
Sbjct: 518 VTRVSRRKELHAE 530
>ref|NP_565815.1| fertilization-independent seed 2 protein; protein id: At2g35670.1
[Arabidopsis thaliana] gi|20197536|gb|AAD15448.2|
fertilization-independent seed 2 protein [Arabidopsis
thaliana]
Length = 632
Score = 37.4 bits (85), Expect = 0.16
Identities = 33/133 (24%), Positives = 54/133 (39%), Gaps = 14/133 (10%)
Frame = +2
Query: 98 NTGTVTRGNESRKNKSA------LQQPPKHHKTSKQPNIYPKRIDPI*NDDSIKPSKLKN 259
N + R + S+KNKS + PPK + K +I I + S+ K
Sbjct: 343 NVSSTPRAHSSKKNKSTRKNVDNVPSPPKTRSSKKTSDILTTTQPTI-----AESSEPKV 397
Query: 260 LHQNTQFIELIPGAYIKQQTEK*IKR--------KTRHNEKPTEITTSKQASPTQPSDHL 415
H N + P A+ ++ + K KTR ++K + I + Q + +PS+
Sbjct: 398 RHVNDDNVSSTPRAHSSKKNKSTRKNDDNIPSPPKTRSSKKTSNILATTQPAKAEPSEPK 457
Query: 416 LNNVSMEKTLRPE 454
+ VS K L E
Sbjct: 458 VTRVSRRKELHAE 470
>gb|AAH36187.1| Similar to serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 35.8 bits (81), Expect = 0.45
Identities = 28/107 (26%), Positives = 50/107 (46%), Gaps = 3/107 (2%)
Frame = +3
Query: 294 PEPT*NNKQRNR*KEKLDIMRSQPRSQQASKHLQHSRQTTYSTTSVWKKH*GRKETVATT 473
PEP + ++N KEK + ++QPRS+ SK +R + S T ++H R + +
Sbjct: 254 PEPKEPSPEKNSKKEK-EKEKTQPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPR 312
Query: 474 PLP*PMQQIKEMSKPSLNTETPP---STSGKETNNQNPSKNGKRPTA 605
P P + +PS TPP + +++P + +R +A
Sbjct: 313 RRPSPRR------RPSPRRRTPPRRMPPPPRHRRSRSPVRRRRRSSA 353
>ref|NP_058079.1| Ser/Arg-related nuclear matrix protein; plenty-of-prolines-101;
serine/arginine repetitive matrix protein 1 [Mus
musculus] gi|3153821|gb|AAC17422.1|
plenty-of-prolines-101; POP101; SH3-philo-protein [Mus
musculus]
Length = 897
Score = 34.7 bits (78), Expect = 1.0
Identities = 26/101 (25%), Positives = 44/101 (42%)
Frame = +3
Query: 294 PEPT*NNKQRNR*KEKLDIMRSQPRSQQASKHLQHSRQTTYSTTSVWKKH*GRKETVATT 473
PEP + ++N KEK +++PRS+ SK +R + S T ++H R + +
Sbjct: 254 PEPKEPSPEKNSKKEK---EKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPR 310
Query: 474 PLP*PMQQIKEMSKPSLNTETPPSTSGKETNNQNPSKNGKR 596
P P + +PS TPP ++ G+R
Sbjct: 311 RRPSPRR------RPSPRRRTPPRRMPPPPRHRRSRSPGRR 345
>gb|AAF35326.1|AF222909_2 unknown [Candida albicans]
Length = 219
Score = 34.3 bits (77), Expect = 1.3
Identities = 17/47 (36%), Positives = 24/47 (50%), Gaps = 5/47 (10%)
Frame = +2
Query: 92 PLNTGTVTRGNESRKNKSALQQPPKHHKTSKQP-----NIYPKRIDP 217
PLN + RGN S + ++ PP HK +K+P N P +DP
Sbjct: 6 PLNPMSKVRGNNSSGHDDSVPPPPPAHKVNKKPLDDKTNFPPPEVDP 52
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,448,677
Number of Sequences: 1393205
Number of extensions: 12451557
Number of successful extensions: 42224
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 39031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42022
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
